Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N22
(352 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 172 1e-44
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 172 1e-44
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 90 1e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 64 6e-12
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.28
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 27 0.64
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 2.6
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 4.5
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 4.5
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 4.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 4.5
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 24 6.0
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 24 7.9
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 7.9
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 24 7.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 172 bits (419), Expect = 1e-44
Identities = 72/114 (63%), Positives = 93/114 (81%)
Frame = +1
Query: 10 RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIF 189
RTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+RIR++AD C+GLQGFL+F
Sbjct: 83 RTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVF 142
Query: 190 HXXXXXXXXXXXXLLMERLSVDYGKKCKLECAIYPVPQVYTAVVEPYNSILTTH 351
H LL+ERL+++YGKK L+ ++YP PQV T+VVEPYNS+LTTH
Sbjct: 143 HSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTH 196
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 172 bits (419), Expect = 1e-44
Identities = 75/114 (65%), Positives = 92/114 (80%)
Frame = +1
Query: 10 RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIF 189
RTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+IR++AD C+GLQGFL+F
Sbjct: 79 RTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVF 138
Query: 190 HXXXXXXXXXXXXLLMERLSVDYGKKCKLECAIYPVPQVYTAVVEPYNSILTTH 351
H LL+ERL+++Y KK KL+ ++YP PQV T+VVEPYNS+LTTH
Sbjct: 139 HSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTH 192
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 89.8 bits (213), Expect = 1e-19
Identities = 40/114 (35%), Positives = 63/114 (55%)
Frame = +1
Query: 10 RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIF 189
++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD +R+ A+ C LQGF +
Sbjct: 77 KSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLT 136
Query: 190 HXXXXXXXXXXXXLLMERLSVDYGKKCKLECAIYPVPQVYTAVVEPYNSILTTH 351
H LL+ ++ +Y + ++ P P+ VVEPYN+ L+ H
Sbjct: 137 HSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMH 190
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 64.1 bits (149), Expect = 6e-12
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Frame = +1
Query: 19 TYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 192
TY L++PE ++ K A NN+A G Y+ + I + ++D I + AD L+GF + H
Sbjct: 81 TYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLH 139
Query: 193 XXXXXXXXXXXXLLMERLSVDYGKKCKLECAIYPVPQ-VYTAVVEPYNSIL 342
L+ERL+ Y KK +++P Q V VV+PYNS+L
Sbjct: 140 SIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLL 190
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.7 bits (61), Expect = 0.28
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 342 KDRVVGLYNSSVHLGYGIDSALQFTLLAVVNGESLHEERSETRTGATTERVEDEESL-EA 166
KD++ L N + HLG + SA Q + E + + +++ RV++E + E
Sbjct: 146 KDQIEALQNENSHLGEQVQSAHQAL-------SDIEERKKQHMFASSSSRVKEEILVQEK 198
Query: 165 CALVSEFADAVED 127
ALVS+ A D
Sbjct: 199 SALVSDLASLQSD 211
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 27.5 bits (58), Expect = 0.64
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -2
Query: 237 HEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYDFLSNGVVTTSIVVCGILLT 58
HE+ + +TG ++ +++E ++A D E+QV + S G + VV LL
Sbjct: 108 HEKPARPQTGEGSDNEDEDEDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLE 167
Query: 57 SDKLFWMKQLSV 22
+D + + + V
Sbjct: 168 TDPKYGLTESEV 179
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 141 DAVEDQVYDFLSNGVVT-TSIVVC 73
DA DQ+ +++ NG++T T IV C
Sbjct: 68 DATIDQLQNYMENGILTSTDIVHC 91
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 61 KEDAANNYARGHYTIGKEIVDLV 129
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 279 VRYLSRTPGVHCCCRALQLYPYN 347
V ++S+ P H C L + PYN
Sbjct: 627 VGHISQLPKAHTCFNRLDIPPYN 649
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 240 LHEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYDFLS-NGVV 94
LH + + + ++ ED+ +C ++S AD + + L+ NG++
Sbjct: 1078 LHSQPIQNVSDVNNKKDEDDHEQTSCLIISGIADVFSENMSLLLNVNGIL 1127
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 261 AVVNGESLHEERSETRTGATTERVEDEESLE 169
AVVNG S H + + + + ESLE
Sbjct: 662 AVVNGNSQHHHNRDDASSGLSSNGSENESLE 692
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 24.2 bits (50), Expect = 6.0
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = -2
Query: 258 VVNGESLHEERSETRTGATTERVEDEESLEACALVSEFA---DAVEDQVYDFLSNGVVTT 88
+VN ES E A E +EDEE S D + D YD ++NGV T
Sbjct: 129 IVNNESA--EIIRMFNDAFNEVIEDEEKRVVDLYPSSLRTKIDELNDYFYDTVNNGVYKT 186
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 85 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQ 174
A GH +G E+V D +RK ++ T L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 52 ITGKEDAANNYARGHYTIGKEIVDLVL 132
IT + NN GH T+G + V L L
Sbjct: 883 ITDFSRSVNNQRNGHLTVGSDAVCLSL 909
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 145 CGCGRGPSLRFPFQWCS 95
C CG+ +LRFP CS
Sbjct: 43 CYCGKDRNLRFPDLQCS 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,889
Number of Sequences: 5004
Number of extensions: 27314
Number of successful extensions: 102
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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