Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N21
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 80 8e-17
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 1.0
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 1.8
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 25 1.8
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 1.8
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 3.1
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 24 4.2
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 24 4.2
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 24 5.5
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 24 5.5
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 24 5.5
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 24 5.5
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 23 7.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 23 7.3
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 23 9.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 23 9.6
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 23 9.6
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 79.8 bits (188), Expect = 8e-17
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +3
Query: 21 PNQNQ-RVCYQSYLDFHRCQKVRGKNYDPCYYFQRVYKSMCPNEWVDKWDNQRAEGTFAG 197
PN NQ + C+QSY+D+ RC K +G+++ PC F Y+S+CP EWV++WD QR GTF
Sbjct: 22 PNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPA 81
Query: 198 RI 203
I
Sbjct: 82 PI 83
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 1.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 139 VPTSGSTNGTTSARREPSPAGFKLFQS 219
+P+ G +N ++S R AGF LF+S
Sbjct: 194 LPSGGLSNLSSSLRSSSKSAGFSLFES 220
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 144 WDTWTCRPAGNSSTGRNSCRGPSGIDGSLNNSDS 43
+D +T + NSS RNS + ++ + +NSDS
Sbjct: 4 FDGFTRPTSSNSSANRNSNNSMNRVENNNSNSDS 37
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 1.8
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 53 LFRLPSMPEGPRQELRPVLLFPAGLQVHVSQRVGRQMGQPARG-GNLRRQDLNYSKALL* 229
L RLP + + P +EL P+L L + S + + + + Q+ N + A+L
Sbjct: 57 LTRLPLLAQAPEKELEPILAVFINL-IQESAAFEDHVSKFCQALEQIADQNNNLTPAILS 115
Query: 230 FITIIFN 250
++I+FN
Sbjct: 116 VLSILFN 122
>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 103
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 83 PRQELRPVLLFPAGLQVHVSQRVGRQMGQPA 175
P+ ELRP L FP L + R+ + Q A
Sbjct: 15 PKDELRPWLSFPKTLDTSIRARLQKMPPQQA 45
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 274 LNHIARPIVKNNRNKLQECFGII*ILPAKVPSAR 173
L+H+ + I+ R KL++ G + KVPSA+
Sbjct: 609 LDHVVQAIIHYERFKLRKYLGNMSEFVKKVPSAK 642
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 99 DPCYYFQRVYKSMCPNEWVDKWDNQ 173
DP Y ++ PNEWV +W Q
Sbjct: 379 DPRYIKLFGSNAILPNEWVTEWVEQ 403
>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 24 NQNQRVCYQSYLDFHRCQKV 83
N+ QR+ Q DF RCQK+
Sbjct: 99 NEIQRLTIQITQDFQRCQKL 118
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 176 ALVVPFVDPLVGTHGLVDPLEIVARVVILAA 84
A VP ++ ++ T G+VDP+ VA +++A
Sbjct: 131 ANTVPAIERILTT-GIVDPISAVASAALVSA 160
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 206 LNPAGEGSLRALVVPFVDPLVGTHGLVDPL 117
+NP GS+ L+ PF + + TH + PL
Sbjct: 399 MNPILNGSVVRLIHPFTNRNLHTHKIPAPL 428
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 23.8 bits (49), Expect = 5.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 65 PSMPEGPRQELRPVLLFPAGLQVHVSQRVGRQMGQPARGGNLRRQDLNYSKALL 226
PSM GP+ E+ P A L + V Q +G N+ ++ NY+ +L
Sbjct: 457 PSMSNGPKSEVSPSQSQQAPLIQSSTSPVSLQFPPEVQGSNVDKR--NYALNVL 508
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 23.8 bits (49), Expect = 5.5
Identities = 14/58 (24%), Positives = 21/58 (36%)
Frame = +1
Query: 1 TAPSTKFLTKTNESAIRVXXXXXXXXXXXXXXXXXXXXXXGSTSPCVPTSGSTNGTTS 174
T+ +T ++ S+ R STS V TSGS+ T+S
Sbjct: 524 TSSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGSSHTITSTSQSVHTSGSSTSTSS 581
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 72 IDGSLNNSDSRLVGF 28
+D L NSD RL GF
Sbjct: 1917 VDPKLKNSDDRLAGF 1931
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +1
Query: 121 GSTSPCVPTSGSTN-GTTS 174
GSTS +P+S S N GTTS
Sbjct: 898 GSTSYSIPSSSSRNEGTTS 916
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 102 GRNSCRGPSGIDGSLNNSDSRLVG 31
G N GP + G L++S S L+G
Sbjct: 384 GGNCVEGPIRLLGGLDHSPSHLIG 407
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 23.0 bits (47), Expect = 9.6
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Frame = -2
Query: 186 FPPRAGCP--ICR----PTRWDTWTCRPAGNSSTGRNSCRGPS 76
F GC ICR P+++ ++CR A NSS S G S
Sbjct: 397 FLTNGGCYSYICRSRSCPSKYQCYSCRCARNSSLEFTSLPGQS 439
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 23.0 bits (47), Expect = 9.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 265 IARPIVKNNRNKLQECFGII*ILPAKVPSARWLSHL 158
+AR I+KN + EC + I K+ S +L L
Sbjct: 415 VARAIIKNKLVETPECLDLFKIFIQKLASPTFLECL 450
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,531
Number of Sequences: 5004
Number of extensions: 25331
Number of successful extensions: 70
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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