Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N21
(301 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 76 4e-15
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 30 0.35
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 30 0.35
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 30 0.35
Z77664-1|CAB01216.2| 900|Caenorhabditis elegans Hypothetical pr... 28 1.1
AL117195-5|CAB55012.1| 732|Caenorhabditis elegans Hypothetical ... 28 1.1
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 28 1.4
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 27 2.5
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 27 2.5
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 27 2.5
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 27 2.5
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 27 2.5
AF039051-9|AAB94260.1| 169|Caenorhabditis elegans Hypothetical ... 27 3.3
Z81592-2|CAB04726.1| 407|Caenorhabditis elegans Hypothetical pr... 26 5.8
AF039040-5|AAB94181.2| 472|Caenorhabditis elegans Hypothetical ... 26 5.8
AC006610-2|AAK85448.1| 445|Caenorhabditis elegans Hypothetical ... 26 5.8
U80030-13|AAG24169.1| 831|Caenorhabditis elegans Hypothetical p... 25 7.6
U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical pr... 25 7.6
AC084197-18|AAM44394.1| 546|Caenorhabditis elegans Hypothetical... 25 7.6
AC024777-4|AAF60561.3| 627|Caenorhabditis elegans Hypothetical ... 25 7.6
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 76.2 bits (179), Expect = 4e-15
Identities = 29/64 (45%), Positives = 41/64 (64%)
Frame = +3
Query: 9 FDQVPNQNQRVCYQSYLDFHRCQKVRGKNYDPCYYFQRVYKSMCPNEWVDKWDNQRAEGT 188
F QV + QR C+ Y+DFHRC ++ G++Y PC +FQ VYK CP W ++WD +EG
Sbjct: 57 FPQV--RKQRQCFAYYVDFHRCNELMGQDYKPCKFFQNVYKDFCPGFWTERWDELLSEGR 114
Query: 189 FAGR 200
F +
Sbjct: 115 FPAK 118
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 29.9 bits (64), Expect = 0.35
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 207 FKSCRRRFPPRAGCPICRPTRWDTWTCR 124
F + +++FP R G C P W W+C+
Sbjct: 52 FVTHKQQFPCREGDNKCTPDEWGRWSCK 79
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 29.9 bits (64), Expect = 0.35
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 207 FKSCRRRFPPRAGCPICRPTRWDTWTCR 124
F + +++FP R G C P W W+C+
Sbjct: 52 FVTHKQQFPCREGDNKCTPDEWGRWSCK 79
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 29.9 bits (64), Expect = 0.35
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 207 FKSCRRRFPPRAGCPICRPTRWDTWTCR 124
F + +++FP R G C P W W+C+
Sbjct: 47 FVTHKQQFPCREGDNKCTPDEWGRWSCK 74
>Z77664-1|CAB01216.2| 900|Caenorhabditis elegans Hypothetical
protein F53H10.2 protein.
Length = 900
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 27 QNQRVCYQSYLDFHRCQ-KVRGKNYDPCYYFQRVYKSMCPNEW 152
Q Q YQS DF + ++ GK+ C F +K CP+++
Sbjct: 572 QFQDAIYQSEKDFDKVAVELPGKSVKECVQFYYTWKKDCPDDY 614
>AL117195-5|CAB55012.1| 732|Caenorhabditis elegans Hypothetical
protein Y57A10A.7 protein.
Length = 732
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 63 FHRCQKVRGKNYDPCYYFQRVYKSMCPNEWVDKWDN 170
F+R ++ G YY+ R ++ + PN + KWDN
Sbjct: 29 FNRFAELDGAGLSHIYYYIRFHEHIAPN--IAKWDN 62
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 62 LPSMPEGPRQELRPVLLFPAGLQVHVSQRVGRQMGQP 172
+P MP GP Q + L AG + ++ QMG P
Sbjct: 628 MPGMPHGPPQPPQNPALMVAGNRAGSAEAAAAQMGNP 664
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 168 CPICRPTRWDTWTCRPAGNSSTGRNSCRGPSGIDGSLNNSDSRLV 34
CP+C+ +W + GN S + GP DG+ +++ S +V
Sbjct: 788 CPLCKDAKWSPY---GYGNGSASFPTSLGPRVDDGNGSSATSLIV 829
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 168 CPICRPTRWDTWTCRPAGNSSTGRNSCRGPSGIDGSLNNSDSRLV 34
CP+C+ +W + GN S + GP DG+ +++ S +V
Sbjct: 722 CPLCKDAKWSPY---GYGNGSASFPTSLGPRVDDGNGSSATSLIV 763
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 168 CPICRPTRWDTWTCRPAGNSSTGRNSCRGPSGIDGSLNNSDSRLV 34
CP+C+ +W + GN S + GP DG+ +++ S +V
Sbjct: 788 CPLCKDAKWSPY---GYGNGSASFPTSLGPRVDDGNGSSATSLIV 829
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 168 CPICRPTRWDTWTCRPAGNSSTGRNSCRGPSGIDGSLNNSDSRLV 34
CP+C+ +W + GN S + GP DG+ +++ S +V
Sbjct: 722 CPLCKDAKWSPY---GYGNGSASFPTSLGPRVDDGNGSSATSLIV 763
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 168 CPICRPTRWDTWTCRPAGNSSTGRNSCRGPSGIDGSLNNSDSRLV 34
CP+C+ +W + GN S + GP DG+ +++ S +V
Sbjct: 722 CPLCKDAKWSPY---GYGNGSASFPTSLGPRVDDGNGSSATSLIV 763
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 168 CPICRPTRWDTWTCRPAGNSSTGRNSCRGPSGIDGSLNNSDSRLV 34
CP+C+ +W + GN S + GP DG+ +++ S +V
Sbjct: 722 CPLCKDAKWSPY---GYGNGSASFPTSLGPRVDDGNGSSATSLIV 763
>AF039051-9|AAB94260.1| 169|Caenorhabditis elegans Hypothetical
protein C14C6.2 protein.
Length = 169
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 168 CPICRPTRWDTWTCRPAGNSSTGRNSCRG 82
C C + TC+ N STGR+ C G
Sbjct: 116 CGYCSSSATTAGTCQDKINPSTGRSDCPG 144
>Z81592-2|CAB04726.1| 407|Caenorhabditis elegans Hypothetical
protein T16G1.2 protein.
Length = 407
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 65 PSMPEGPRQELRPVLLFPA 121
P++ EGP+ E+ P L+FP+
Sbjct: 25 PALLEGPQNEVVPSLIFPS 43
>AF039040-5|AAB94181.2| 472|Caenorhabditis elegans Hypothetical
protein T22B11.1 protein.
Length = 472
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = -2
Query: 198 CRRR-FPPRAGCPICRPTRWDTWT-CRPAGNSSTGRNSC---RGPSGID-GSLNNSDSRL 37
CR R F P + RWD WT C+ + C RG I+ S+ +SD +L
Sbjct: 298 CRARLFSPDNNIDLFIEVRWDAWTSCQGDQPTKRREGHCYLVRGEGSINIESMKSSDKKL 357
>AC006610-2|AAK85448.1| 445|Caenorhabditis elegans Hypothetical
protein C30F12.2 protein.
Length = 445
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 134 GLVDPLEIVARVVILAADLLASMEV*ITLIADSLVLVR 21
G DP+ ++ ++ +LL E +T IAD+++L R
Sbjct: 147 GKFDPVPVIVDEIMETTNLLCFDEFQVTDIADAMILKR 184
>U80030-13|AAG24169.1| 831|Caenorhabditis elegans Hypothetical
protein K12D9.12 protein.
Length = 831
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 3 CPFDQVPNQNQRV-CYQSYLDFHRCQKVRG--KNYDPCYYFQ-RVYK 131
C F+ N+ + CY +YLD + K+ G ++ D C + + VYK
Sbjct: 488 CNFEVENNEKLEIFCYTNYLDHYMNMKIFGNKRDCDGCQFGEVDVYK 534
>U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical
protein B0218.1a protein.
Length = 572
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 114 NSSTGRNSCRGPSGIDGSLNNSDSRLVGFG*ELG 13
N +C G SG +G+L + L+G G ++G
Sbjct: 203 NPYDSTRTCGGSSGGEGALIGAGGSLIGIGTDVG 236
>AC084197-18|AAM44394.1| 546|Caenorhabditis elegans Hypothetical
protein Y73B6BL.4 protein.
Length = 546
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 138 CPNEWVDKWDNQRAEGTFAGRI*IIPKHSCNLLRLFLTIGRAM*FSSIKCVNT 296
C ++D ++G F G + +I KHS L+++I + M I +NT
Sbjct: 267 CREVYMDVSKRLFSQGKFQGSMGLILKHSYYNTNLWISILKQMIGEDITMINT 319
>AC024777-4|AAF60561.3| 627|Caenorhabditis elegans Hypothetical
protein Y42H9AR.4 protein.
Length = 627
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 148 SGSTNGTTSARREPSPAGFKL 210
S +TNGT SA R+ S AG+++
Sbjct: 253 SPTTNGTRSAPRKASLAGYRI 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,164,569
Number of Sequences: 27780
Number of extensions: 151453
Number of successful extensions: 528
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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