Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N20
(357 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 132 2e-32
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 42 4e-05
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 26 1.5
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 26 2.0
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 3.5
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 3.5
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 3.5
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 3.5
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 24 6.1
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 24 6.1
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 24 6.1
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 24 6.1
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 24 6.1
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 24 8.0
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 24 8.0
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 24 8.0
SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat... 24 8.0
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 24 8.0
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 132 bits (318), Expect = 2e-32
Identities = 60/104 (57%), Positives = 81/104 (77%)
Frame = +1
Query: 46 RGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLESKV 225
RG + ++MGKNTM+R+A++ + P LE+LLP ++GNVGFVFT DL +VR+ ++ + +
Sbjct: 46 RGTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVI 105
Query: 226 QAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 357
APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GT
Sbjct: 106 AAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGT 149
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 41.5 bits (93), Expect = 4e-05
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 43 WRGHSIVLMGKNTMMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLE 216
W+G S + MGK +M KA+ E A + KL + G VG +FT +V E
Sbjct: 60 WKG-SRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFE 117
Query: 217 SKVQAP-ARPGAIAPLSVVIPA 279
S VQ AR GA+AP + VIPA
Sbjct: 118 SFVQNDFARAGAVAPFTHVIPA 139
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 26.2 bits (55), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 19 MXTDPVFHWRGHSIVLMGKNTMMRKAIKDHLE 114
M +HW + G N + K ++DHL+
Sbjct: 1 MSLHDAYHWPSRTPSRKGSNIKLNKTLQDHLD 32
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 2.0
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 1 ARGCNMMXTDPVFH--WRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVG-FV 171
AR N + ++P W G + + + MRKA+++ LE + + HI +G F
Sbjct: 329 ARIANHILSNPALREQWAGEVVGMSERLKSMRKALRNILEKDLKNKHSWKHITDQIGMFC 388
Query: 172 FT 177
+T
Sbjct: 389 YT 390
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 3.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 58 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 192
I L+G N ++ DH++ +P ++ P+I V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 3.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 52 HSIVLMGKNTMMRKAIKDHLE 114
HS++ KNT KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.0 bits (52), Expect = 3.5
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 315 ERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFALQQFITHINKISTGEDKANISLD 148
++ +L K + D+R + R LD LQ +I +IST + N +L+
Sbjct: 271 KQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSIELKNTALE 326
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 3.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 78 HHDEESHQGPS*NKSSSRKTASSHQG 155
HH+ + S S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.2 bits (50), Expect = 6.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 75 KHHDEESHQGPS*NKSSSRKTASSHQG 155
KHH+ E H+GP ++ K H+G
Sbjct: 343 KHHELEEHEGPEHHRGPEDK--EHHKG 367
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 6.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 187 LVDVRDKLLESKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 357
L DV + + S +P P ++AP++ ++++GLG + SI T + T
Sbjct: 342 LSDVDENISTSS--SPRSPASLAPVNNSERSYDSGLGESLNNMHIGKSIATAVPVNT 396
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 6.1
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 159 CWLCLHPW 182
CW+CL PW
Sbjct: 317 CWVCLGPW 324
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 24.2 bits (50), Expect = 6.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 289 GLGPEKTSFFQALSIPTKISK 351
G+G TS FQ +S P+++SK
Sbjct: 345 GIGTNLTSDFQKVSNPSEVSK 365
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 24.2 bits (50), Expect = 6.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -3
Query: 46 ANEIQDLXASCCSLV 2
A+EIQD ++CC+L+
Sbjct: 912 AHEIQDWLSACCNLI 926
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 23.8 bits (49), Expect = 8.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 98 SRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINCWRAKSKPRLVLEPL 253
S+T I +SK LTSR+ +L +++ V + R + P+L + L
Sbjct: 54 SKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAAL 105
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 23.8 bits (49), Expect = 8.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 110 LKQIQLSKNCFLTSREMLAL-SSPVEILLMCVIN 208
L LSKN F+TSR A+ SS V+ L + +++
Sbjct: 835 LSSKNLSKNSFMTSRVNWAIQSSAVDYLHLLLVS 868
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 169 VFTRGDLVDVRDKLLESKVQAPARP 243
V T+GD DVR+K S+V+ +P
Sbjct: 247 VVTKGDQYDVREKSSGSEVRNLGKP 271
>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
complex beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 259 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKG 354
LS ++P LGPE + + ++ K+S+G
Sbjct: 96 LSEILPGILNNLGPESLTALRQMAEQLKVSEG 127
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 23.8 bits (49), Expect = 8.0
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 196 VRDKLLESKVQAPARPGAIA--PLSVVIPAHNTGLGPEKTSF 315
V D LE + + P +P A P+SVVI H+ G + SF
Sbjct: 18 VIDTPLEKR-RTPGKPRATREPPISVVITGHSKGSEDDLISF 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,994
Number of Sequences: 5004
Number of extensions: 28771
Number of successful extensions: 104
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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