Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N20
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 126 7e-30
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 125 9e-30
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 125 9e-30
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 31 0.35
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 30 0.47
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 30 0.47
10_01_0081 - 1033837-1034090,1034500-1034686,1034713-1034941,103... 29 1.4
06_01_1085 - 8886868-8887556,8887629-8888574 28 2.5
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 28 2.5
02_04_0427 - 22809481-22810335 27 3.3
04_01_0404 - 5297341-5297970,5298304-5299179 27 4.3
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 27 5.7
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 5.7
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 5.7
03_05_0907 + 28678909-28679253 27 5.7
02_01_0152 - 1070249-1070296,1070443-1070515,1070601-1070671,107... 27 5.7
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 26 7.6
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 26 7.6
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 126 bits (303), Expect = 7e-30
Identities = 60/106 (56%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Frame = +1
Query: 46 RGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLES 219
RG SIVLMGKNT++R+ IK H + N +L+P + GNVG +FT+GDL +VR+++ +
Sbjct: 49 RGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKY 108
Query: 220 KVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 357
KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT
Sbjct: 109 KVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT 154
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 125 bits (302), Expect = 9e-30
Identities = 60/106 (56%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Frame = +1
Query: 46 RGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLES 219
RG SIVLMGKNT++R+ IK H + N +L+P + GNVG +FT+GDL +VR+++ +
Sbjct: 49 RGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKY 108
Query: 220 KVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 357
KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT
Sbjct: 109 KVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT 154
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 125 bits (302), Expect = 9e-30
Identities = 60/106 (56%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Frame = +1
Query: 46 RGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLES 219
RG SIVLMGKNT++R+ IK H + N +L+P + GNVG +FT+GDL +VR+++ +
Sbjct: 49 RGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKY 108
Query: 220 KVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 357
KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT
Sbjct: 109 KVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT 154
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 30.7 bits (66), Expect = 0.35
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Frame = -1
Query: 255 SNGSRTSRGLDFALQQFITHINKISTGEDKANISL--DVRKQFFESWICFK--------- 109
+NG+R G + +L+Q++T + ++TGE K ++ +V K I K
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFEWEVEKMGIPGAIIVKNNHAAEFFL 122
Query: 108 --MVLDGFPHHGVFAHEHNAVTTP-MKYR 31
+ LD P HG N+ P KYR
Sbjct: 123 KTITLDNVPGHGAVVFVANSWIYPASKYR 151
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 30.3 bits (65), Expect = 0.47
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Frame = +1
Query: 124 ALEKL-LPH--IKGNVGFVFTRGDLVDVRDKLLESKVQAPARPGAIAPLSV----VIPAH 282
AL+KL LPH ++GN+GF+ + + + D +L+ A P + LS I H
Sbjct: 401 ALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARLISFIADH 460
Query: 283 N--TGLGPEKTSFFQALSI 333
N G PEK S +L +
Sbjct: 461 NKLAGSLPEKMSNLSSLEL 479
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 30.3 bits (65), Expect = 0.47
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +1
Query: 121 PALEK-LLPHIKGN---VGFVFTRGDLVDV--RDKLLESKVQAPARPGAIAPLSVVIPA 279
PAL+K L H K VG + T GDL + + L++ KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>10_01_0081 -
1033837-1034090,1034500-1034686,1034713-1034941,
1035328-1035638
Length = 326
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -1
Query: 339 SGDGKSLEERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFALQQFITHINKISTGEDKAN 160
S GK L + R +A+ M+ D + + RT RGL + ++ I + G+D+
Sbjct: 219 SEQGKKLRDHVEARREATAMTWKDAARCPDELRTYRGLLERCGKLLSSIQAFTAGDDQQP 278
Query: 159 ISLDV 145
+ V
Sbjct: 279 CQMSV 283
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 40 HWRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLP 144
H +G + +GK T++R A+K+ + +P L L+P
Sbjct: 369 HRQGGAGEQLGKMTLLRAAMKEAMRLHPPLPLLIP 403
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 150 DVRKQFFESWICFKMVLDGFPHHGVFAHEHN 58
D Q+FE+W C ++ GF G F HN
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHN 206
>02_04_0427 - 22809481-22810335
Length = 284
Score = 27.5 bits (58), Expect = 3.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 123 WICFKMVLDGFPHHGVFAHEHNAVTTPMKY 34
W F+ + FP GVF HE +T Y
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRNY 152
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 64 LMGKNTMMRKAIKDHLETNPALEKLLPHI 150
L+ + M+ IK+ L NP L LLPH+
Sbjct: 342 LLENLSYMKLVIKETLRLNPVLPLLLPHL 370
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 133 KLLPHIKGNVGFVFTRGDLVDVRDKLLESKVQAP 234
KLLP VGFV RG V +K+++ P
Sbjct: 464 KLLPLDANKVGFVNVRGPHVQAPEKIMDGDYTGP 497
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 63 AHGQKHHDEESHQGPS*NKSSSRKTASSHQGKC 161
A ++ + G S N +SS KTA S Q KC
Sbjct: 740 AEQEQPEENAEASGESGNTNSSHKTAHSSQNKC 772
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 345 NLSGDGKSLEERSLLRTKASVMSGNDDRQWSNG 247
N G G+ + SLLRT +S++SG S G
Sbjct: 8 NPMGPGQPVGAASLLRTSSSLLSGGQQGMGSGG 40
>03_05_0907 + 28678909-28679253
Length = 114
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 293 RPVL*AGMTTDNGAMAPGRAGA 228
RP+L NGA APG AGA
Sbjct: 53 RPLLHGSAAAANGASAPGNAGA 74
>02_01_0152 -
1070249-1070296,1070443-1070515,1070601-1070671,
1070768-1070874,1071836-1072007
Length = 156
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 73 KNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLE 216
K T RK HL+ N AL K+ V +G L+++ D+L++
Sbjct: 86 KVTGKRKRNAQHLQENSALCKVCTSSNSFVVRCCVKGSLLEINDRLIK 133
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 163 GFVFTRGDLVDVRDKLLESKVQAPARP 243
GF TR LVD++ +++ K+ PA P
Sbjct: 192 GFELTRVTLVDIKGEVVLDKLVKPANP 218
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 321 LEERSLLRT--KASVMSGNDDRQWSNGSRTSR 232
L ERS LRT K DR++ NGSR SR
Sbjct: 485 LPERSALRTGDKQWFFFSRMDRKYPNGSRASR 516
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,604,698
Number of Sequences: 37544
Number of extensions: 209586
Number of successful extensions: 646
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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