Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N18
         (191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    23   4.2  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   7.4  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    23   7.4  
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   7.4  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    22   9.8  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    22   9.8  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    22   9.8  

>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 145 LI*FSV*ECLKTQYNVRTLTKPTENHFISKYKK 47
           LI F   +   T Y+VRT  K +  HF++  K+
Sbjct: 140 LIPFIYYDGTSTTYHVRTRLKDSVGHFLADMKQ 172


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 79  WVLLVFLRCIVFLNILRH 132
           WVLL  +  ++ + ILRH
Sbjct: 13  WVLLPIMFVMILIGILRH 30


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 106 YNVRTLTKPTENHFISKYKKTSSA 35
           YN+R + K   N ++ +  +TSS+
Sbjct: 83  YNLRVMNKFVRNSYVFRESETSSS 106


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 124 ECLKTQYNVRTLTKPTENHFISKYKK 47
           E LK+  N +      E+H +SKY+K
Sbjct: 72  ETLKSALNGKLPEVNIESHMLSKYRK 97


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 160 IYNTTLI*FSV*ECLKTQYNVRTLTKPTENHF 65
           + +TT++  +  E L  Q  +RTL +   NHF
Sbjct: 615 VLSTTVV--AAAEILLRQRGIRTLPETVRNHF 644


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 136 FSV*ECLKTQYNVRTLTKP 80
           ++V +C K Q NVR L  P
Sbjct: 41  YNVPKCSKNQVNVRFLASP 59


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 76  RWVLLVFLRCIVFLNILR 129
           RW L VF +C+ F   LR
Sbjct: 317 RWYLTVFHQCVPFHTQLR 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,477
Number of Sequences: 5004
Number of extensions: 12207
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)