Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N18
         (191 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0777 + 21109726-21109878,21110258-21110687,21110735-21110781     27   2.8  
04_03_0180 - 12326192-12326650,12326729-12326786,12326889-12327019     26   4.9  

>08_02_0777 +
          21109726-21109878,21110258-21110687,21110735-21110781
          Length = 209

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 78 PKTILFQSIKRHRQPLTCD 22
          P ++   ++ RHR PLTCD
Sbjct: 12 PSSVGHPAVARHRYPLTCD 30


>04_03_0180 -
          12326192-12326650,12326729-12326786,12326889-12327019
          Length = 215

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 78 PKTILFQSIKRHRQPLTCD 22
          P ++   +  RHR PLTCD
Sbjct: 2  PSSVRHPAAARHRYPLTCD 20


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,538,408
Number of Sequences: 37544
Number of extensions: 63445
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)