Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N18
         (191 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF078787-9|AAK82921.1|  183|Caenorhabditis elegans Hypothetical ...    25   7.4  
U42439-6|AAA83510.1|  266|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical
           protein F58G1.7 protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 34  RLTMSFYTLK*NGFRWVLLVFLRCIVFLNILRH*IK*VLCYKSF 165
           RLT++FY +        + +FL   +FLN LR   K  + + SF
Sbjct: 262 RLTLTFYGVF--QLFISIFIFLSATIFLNFLREHCKFAMSFGSF 303


>AF078787-9|AAK82921.1|  183|Caenorhabditis elegans Hypothetical
           protein T17A3.9 protein.
          Length = 183

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 153 TQHLFNLVSKNV*KHNT 103
           TQHLFN  +KN   HN+
Sbjct: 149 TQHLFNFQTKNNRSHNS 165


>U42439-6|AAA83510.1|  266|Caenorhabditis elegans Hypothetical
           protein F19C7.1 protein.
          Length = 266

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 112 TQYNVRTLTKPTENHFISKYKKTSSAFN 29
           T Y  +TLT   E+ +++  ++TS+A N
Sbjct: 128 TMYERKTLTTCVESTYVNYQQETSAAMN 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,292,199
Number of Sequences: 27780
Number of extensions: 68804
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)