Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N16
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    56   1e-09
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   0.62 
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   0.62 
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   1.1  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   4.4  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    24   5.8  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    24   5.8  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    24   7.6  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 56.4 bits (130), Expect = 1e-09
 Identities = 23/57 (40%), Positives = 35/57 (61%)
 Frame = -2

Query: 259 TNVESGDRAAFSKVVQAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREI 89
           T V   D+   + +V A+  NF+ +Y+E RR WGGG++G K+ A +AK  KA A  +
Sbjct: 201 TEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQALLAKRAKAAAATV 257



 Score = 40.3 bits (90), Expect = 8e-05
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = -1

Query: 344 MGVPYCIVKGKSRLGALVHRKTCTSVAL 261
           MGVPY IVK K+RLG ++H+KT   +A+
Sbjct: 173 MGVPYAIVKNKARLGTVIHQKTAAVLAV 200


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 85  VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 186
           ++ H PSP  A +Y   T Y G       V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 85  VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 186
           ++ H PSP  A +Y   T Y G       V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 200 QLQ*ALRRVTQTLGRWRPR*QVERAYRQAGE 108
           Q++  L R+ Q +G +  R ++ERA RQA E
Sbjct: 249 QIRFNLERICQDIGNFDVRSRIERAARQARE 279


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 217 VQAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIA 86
           +   K  FNE  E+L    GGG L  K+    A+L+  +  + A
Sbjct: 25  INEAKKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAA 68


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 122 DTRVRLVTEDATAPVSA*LFVTLIEVG 202
           DT +R   +    PV+   FV+L EVG
Sbjct: 278 DTEIRKAEDQTAVPVAKFSFVSLQEVG 304


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 223 SRRRHGLQTPHL*RATLVQVLRCTSAPNRDLP 318
           S RRH + TPH+ R T  Q  R +S  N   P
Sbjct: 209 SSRRHLISTPHVNRGT--QFKRSSSCRNSRQP 238


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 227 LEGSASYQDQLQ*ALRRVTQTLG 159
           L+   S  DQ++ A+ +V QTLG
Sbjct: 50  LQADVSKADQIETAIEKVIQTLG 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,015
Number of Sequences: 5004
Number of extensions: 20714
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)