Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N16
(344 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 70 5e-13
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 70 5e-13
AL110485-26|CAB60359.3| 779|Caenorhabditis elegans Hypothetical... 28 2.1
U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical p... 27 4.8
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 26 6.3
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 26 6.3
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 26 6.3
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 26 6.3
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 26 6.3
AF000298-6|AAC48262.1| 340|Caenorhabditis elegans Seven tm rece... 26 6.3
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 26 8.3
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 69.7 bits (163), Expect = 5e-13
Identities = 27/63 (42%), Positives = 47/63 (74%)
Frame = -2
Query: 271 ASLFTNVESGDRAAFSKVVQAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKARE 92
A +V D++A +K+V+ + NF+ER+EE+R+HWGGGV+ KS+A+ K+E+A+AR+
Sbjct: 202 AVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARD 261
Query: 91 IAQ 83
+ +
Sbjct: 262 LGK 264
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -1
Query: 338 VPYCIVKGKSRLGALVHRKTCTSVAL 261
VPY I+KGK+ LG +V RKT +VAL
Sbjct: 180 VPYAIIKGKASLGTVVRRKTTAAVAL 205
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 69.7 bits (163), Expect = 5e-13
Identities = 27/63 (42%), Positives = 47/63 (74%)
Frame = -2
Query: 271 ASLFTNVESGDRAAFSKVVQAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKARE 92
A +V D++A +K+V+ + NF+ER+EE+R+HWGGGV+ KS+A+ K+E+A+AR+
Sbjct: 182 AVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARD 241
Query: 91 IAQ 83
+ +
Sbjct: 242 LGK 244
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -1
Query: 338 VPYCIVKGKSRLGALVHRKTCTSVAL 261
VPY I+KGK+ LG +V RKT +VAL
Sbjct: 160 VPYAIIKGKASLGTVVRRKTTAAVAL 185
>AL110485-26|CAB60359.3| 779|Caenorhabditis elegans Hypothetical
protein Y46G5A.17 protein.
Length = 779
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = -2
Query: 307 DWVRLYTARLARASLFTNVESGDRAAFSKVVQAIKTNFNERYEELRRHWGGGVLGNKSNA 128
DW + A T++ +RAAF ++ +T+++ + HW +L K++
Sbjct: 392 DWAKTRRAHFRSGVNKTSLNDIERAAFVVILDDEETHYDPQDPSKLDHWAHNLLHGKAHD 451
Query: 127 R 125
R
Sbjct: 452 R 452
>U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical
protein K05F1.10 protein.
Length = 140
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 215 HYLREGGTVSRLHICEERRSCKSCGVQAHPIVIYPSRY 328
H +R T +R+H+ ER++ + C H ++ P R+
Sbjct: 31 HRVRSPATRTRIHVRSERKA-EECQKHEHHLICGPERH 67
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 123 IRAFDLLPRTPPPQCLRN 176
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 123 IRAFDLLPRTPPPQCLRN 176
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 123 IRAFDLLPRTPPPQCLRN 176
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 123 IRAFDLLPRTPPPQCLRN 176
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 123 IRAFDLLPRTPPPQCLRN 176
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>AF000298-6|AAC48262.1| 340|Caenorhabditis elegans Seven tm
receptor protein 122 protein.
Length = 340
Score = 26.2 bits (55), Expect = 6.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -3
Query: 294 CTPQDLHERRSSQMWSLETVP 232
C P DLH +MW + +P
Sbjct: 117 CRPHDLHHLEGWKMWKIYVIP 137
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 297 ACTPQDLHERRSSQMWSLETVPPSRR*CKLSRPTSMSVTKSYADTGAVA 151
AC PQ +++ SS + TVPP + C +S+ + D G VA
Sbjct: 363 ACQPQCVYQYLSSGSSGISTVPPVTKVC-------ISICQPACDPGCVA 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,897,403
Number of Sequences: 27780
Number of extensions: 125771
Number of successful extensions: 393
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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