Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N16
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   7.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   7.2  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    20   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 172  RRHWGGGVLGNKSNARIAKLEK 107
            R  W G +LG     R++  EK
Sbjct: 1002 REDWNGEILGYYVGYRLSSSEK 1023


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 114 SLAIRAFDLLPRTPP 158
           SL +  F+LL  TPP
Sbjct: 550 SLGVLMFELLTGTPP 564


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 221 LREGGTVSRLHICEERRSCKSC 286
           +RE      L +C  RR   SC
Sbjct: 334 IRESLDTQFLQVCRSRRHSDSC 355


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -2

Query: 193 NERYEELRRHW 161
           ++RY +L+R+W
Sbjct: 24  SDRYSKLKRNW 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,635
Number of Sequences: 438
Number of extensions: 1467
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)