Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N14
(255 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 93 7e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 52 9e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 39 9e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 33 0.006
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 32 0.014
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 30 0.056
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 30 0.056
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.098
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 28 0.23
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 0.40
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 27 0.52
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 0.69
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 26 0.91
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 2.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 24 2.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 24 2.8
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 24 3.7
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 24 3.7
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 3.7
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 23 4.9
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 23 4.9
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 23 6.4
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 23 6.4
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 23 6.4
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 23 6.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 23 6.4
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 23 8.5
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 23 8.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 92.7 bits (220), Expect = 7e-21
Identities = 39/80 (48%), Positives = 55/80 (68%)
Frame = +2
Query: 14 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFRDYVCQAI 193
+L PF KDFY H++V +RS EV +YR + E+ V G+ VP P+ FEEA F +YV + +
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 194 KSMGYKDATPIQAQGWPIAM 253
K +G++ TPIQ Q WP+AM
Sbjct: 138 KQLGFEAPTPIQQQAWPMAM 157
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 52.4 bits (120), Expect = 9e-09
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 2 HEALSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFRDY 178
H ++ + F KDFY + + + SP EV++ R + + + G++ P P+ + +
Sbjct: 369 HSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQ 428
Query: 179 VCQAIKSMGYKDATPIQAQGWP 244
I S+GY+ T IQAQ P
Sbjct: 429 TISVINSLGYEKPTSIQAQAIP 450
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 39.1 bits (87), Expect = 9e-05
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +2
Query: 95 RNKHEVTVSGVEVPNPIEHFEEANFRDYVCQAIKSMGYKDATPIQAQGWPIAM 253
+ + +++ G ++PNP+ ++EEA + + +K + YK+ + IQ P+ +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL 284
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 33.1 bits (72), Expect = 0.006
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 152 FEEANFRDYVCQAIKSMGYKDATPIQAQGWPIAM 253
F+E D +C+A + +G+K TPIQ + P+ +
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVL 81
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 31.9 bits (69), Expect = 0.014
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 110 VTVSGVEVPNPIEHFEEANFRDYVCQAIKSMGYKDATPIQAQGWPI 247
V VSG ++ P+ F ++ Q IK GY TP+Q PI
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPI 202
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 29.9 bits (64), Expect = 0.056
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 80 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFRDYVCQAIKSMGYKDATPIQAQGWP 244
E ED R + V ++ + IE F + + + +AIK MG++ T IQ + P
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIP 121
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 29.9 bits (64), Expect = 0.056
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 92 YRNKHEVTVSGVEVPN---PIEHFEEANFRDYVCQAIKSMGYKDATPIQAQGWP 244
Y KH ++ + + PI F+E + + + +K+ YK+ TPIQA WP
Sbjct: 146 YIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWP 197
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 0.098
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = -3
Query: 193 YCLTHIISKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW 74
+ ++++I + L ++F+ +R+ N+ ++F SIV + W
Sbjct: 856 WAVSNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 0.23
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 152 FEEANFRDYVCQAIKSMGYKDATPIQAQGWPI 247
F+ N ++ A+ + G+K TP+QA P+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPL 34
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 0.40
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 74 PYEVEDYRNKHEVTVSGVE-VPNPI 145
PYE++ YRNKH +S + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 0.52
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 107 EVTVSGVEVPNPIEHFEEANFRDYVCQAIKSMGYKDATPIQAQ 235
E+T S E N + FEE N ++ + + I + GY+ + +Q++
Sbjct: 10 ELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.2 bits (55), Expect = 0.69
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 53 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFRDYVCQAIKSMGYK 211
+ D P +DYR+ +T S + N + +E + Y+CQ + S+ +
Sbjct: 919 REAFDGRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLR 971
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.8 bits (54), Expect = 0.91
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 56 SVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANF-RDYVCQAIKSMGYKD 214
S L R Y E+Y + + N +EH + F D + Q +++GY +
Sbjct: 27 SALGRRGYHSENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALGYSN 80
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.6 bits (51), Expect = 2.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 14 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNP 142
S+ +NKD N K RS ++ + K + S VE+ P
Sbjct: 744 SVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEP 786
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.2 bits (50), Expect = 2.8
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +2
Query: 143 IEHFEEANFRDYVCQAIKSMGYKDATPIQ 229
++HF+E +RD C+ + Y+ ++ +Q
Sbjct: 37 VQHFKECRYRDETCKDDDIVVYEPSSFVQ 65
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 24.2 bits (50), Expect = 2.8
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +2
Query: 143 IEHFEEANFRDYVCQAIKSMGYKDATPIQ 229
++HF+E +RD C+ + Y+ ++ +Q
Sbjct: 37 VQHFKECRYRDETCKDDDIVVYEPSSFVQ 65
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 23.8 bits (49), Expect = 3.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 35 DFYNPHKSVLDRSPYEVEDY 94
D Y PH +LDR + +E Y
Sbjct: 281 DLYFPHTQILDRLNWILEKY 300
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 23.8 bits (49), Expect = 3.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 38 FYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHF 154
F NP + + R +R + VSG VP PIE+F
Sbjct: 236 FSNPATNGMLRGDKPDLLHRAQSRAFVSGEGVPGPIEYF 274
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 23.8 bits (49), Expect = 3.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 59 VLDRSPYEVEDYRNKHEVTVSGVEVPNPIE 148
+LD+ +++D RNK V+ S V P+ ++
Sbjct: 130 ILDKQTEDIDDDRNKSAVSKSLVRHPHRLK 159
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 23.4 bits (48), Expect = 4.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 56 SVLDRSPYEVEDYRNKHEVTVSGVEVPNPIE 148
++ D S + + + V++SGVE P P+E
Sbjct: 49 TIWDSSKFWKQFFEASANVSLSGVEEPVPVE 79
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 23.4 bits (48), Expect = 4.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 149 HFEEANFRDYVCQAIKSMGYKDATPIQAQGWPIAM 253
+F+ + +AI G+K TPIQ + P+ +
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLL 104
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 23.0 bits (47), Expect = 6.4
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 128 EVPNPIEHFEEANFRDYVCQAIKSMGYKDATPIQ 229
E+ N HF + +D + +KS+GY + + ++
Sbjct: 927 EILNSSLHFPGLSIKDTIEFVVKSLGYVEISQLK 960
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 23.0 bits (47), Expect = 6.4
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = +2
Query: 74 PYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFRDYVCQAIKSMG 205
P+E + KH++ ++ V ++ +E+ F++ + + +K G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMI-KHVKDAG 298
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 23.0 bits (47), Expect = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 134 PNPIEHFEEA 163
P P+EH+EEA
Sbjct: 169 PGPVEHYEEA 178
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 217 SIFVTHTFYCLTHIISKVCLFKMFNRIRYFNSTNSDFV 104
SI V+H L H++ + ++ F ++R + S+FV
Sbjct: 599 SIIVSHDSGFLDHVVQAIIHYERF-KLRKYLGNMSEFV 635
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 147 SIGLGTSTPLTVTSCL 100
S GL TSTP+T +S L
Sbjct: 939 STGLNTSTPITSSSVL 954
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 152 FEEANFRDYVCQAIKSMGYKDATPIQAQGWPIAM 253
FE+ + + I G++ +PIQ + PIA+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIAL 79
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 22.6 bits (46), Expect = 8.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 92 YRNKHEVTVSGVEVPNPIEHFEEANFRDYVCQAIK 196
Y N + G EV NP FE R + + I+
Sbjct: 290 YMNSESQNLLGDEVHNPFSDFETVEDRAHEAEFIE 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,069,214
Number of Sequences: 5004
Number of extensions: 19316
Number of successful extensions: 122
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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