Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N12
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 239 1e-64
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 238 2e-64
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 238 3e-64
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 2.9
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 5.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.7
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 24 8.9
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 8.9
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 24 8.9
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 8.9
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 24 8.9
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 239 bits (586), Expect = 1e-64
Identities = 106/143 (74%), Positives = 121/143 (84%)
Frame = +2
Query: 11 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPYKLRECLPLVIFLRNRLKYALTGNEVLK 190
GPKKHLKR+ AP W+LDKL G YAP+PS GP+K RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 191 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKL 370
I+ QRLIKVDGKVRTD T+P GFMDV+S+EK E FRL+YD+KGRFT+HRIT EEAKYKL
Sbjct: 64 ILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKL 123
Query: 371 CKVRRVATGPKSVPYLVTHDGRT 439
CKV+RV G K VP+LVTHDGRT
Sbjct: 124 CKVKRVQLGAKGVPFLVTHDGRT 146
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 238 bits (583), Expect = 2e-64
Identities = 105/143 (73%), Positives = 121/143 (84%)
Frame = +2
Query: 11 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPYKLRECLPLVIFLRNRLKYALTGNEVLK 190
GPKKHLKR+ AP W+LDKL G YAP+PS GP+K RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 191 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKL 370
I+ QRLIKVDGKVRTD T+P GFMDV+S++K E FRL+YD+KGRFT+HRIT EEAKYKL
Sbjct: 64 ILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKL 123
Query: 371 CKVRRVATGPKSVPYLVTHDGRT 439
CKV+RV G K VP+LVTHDGRT
Sbjct: 124 CKVKRVQLGAKGVPFLVTHDGRT 146
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 238 bits (582), Expect = 3e-64
Identities = 105/143 (73%), Positives = 121/143 (84%)
Frame = +2
Query: 11 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPYKLRECLPLVIFLRNRLKYALTGNEVLK 190
GPKKHLKR+ AP W+LDKL G YAP+PS GP+K RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 191 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKL 370
I+ QRLI+VDGKVRTD T+P GFMDV+S+EK E FRL+YD+KGRFT+HRIT EEAKYKL
Sbjct: 64 ILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKL 123
Query: 371 CKVRRVATGPKSVPYLVTHDGRT 439
CKV+RV G K VP+LVTHDGRT
Sbjct: 124 CKVKRVQLGAKGVPFLVTHDGRT 146
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.8 bits (54), Expect = 2.9
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 414 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFAFSMDTTSINPAGYVGS 235
YGTLL L L + + + +LP ++ +F ++ T+ G + S
Sbjct: 578 YGTLLMHFEPTYALSRLVSFAPPEVTF--SLPELDFLTSVFNFPLALRNTATRILGIILS 635
Query: 234 VR--TFPSTLMRRCFTILSTS 178
+ T S ++ CFTI+STS
Sbjct: 636 TKDSTRISEVLSSCFTIISTS 656
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 131 LVIFLRNRLKYALTGNEVLKIV 196
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 263 DVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVP 412
+V S+EK N++F + Y+V + + + K+ ++ ++ K+VP
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVP 1767
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 8.9
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 116 RECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKV 217
+ECLP F +N+L Y L + VL++ K+R + V
Sbjct: 52 KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLV 85
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 24.2 bits (50), Expect = 8.9
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 306 IKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITS 130
I RN S+ MD + YV + + S + C + ++LP S YLS R ++ S
Sbjct: 273 ICRNYSY---MDILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLSPNRAELES 328
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 134 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 250
++ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 241 GVSPHFPVHFDETLLHNLKHLIAGERVLEPISQED 137
G P P+ F + L +K G +L PI++ED
Sbjct: 120 GEQPTEPIDFADPPLPEVKRYGEGNWLLPPIAKED 154
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.2 bits (50), Expect = 8.9
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 179 EVLKIVKQRLIKVDGKV--RTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPE 352
EV K+ ++ I+ G DP+Y +D +S+++ + RL+ D + + R+ E
Sbjct: 194 EVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVED---KELMKRVAEE 250
Query: 353 EAKYKLC 373
+C
Sbjct: 251 NIMLTMC 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,147
Number of Sequences: 5004
Number of extensions: 37069
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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