Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N12
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 217 3e-57
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 214 2e-56
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 214 2e-56
01_01_1101 + 8731427-8732938 29 1.2
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 29 1.6
12_01_0337 - 2591689-2593839 27 6.6
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 6.6
04_04_0950 + 29609484-29611025 27 8.7
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 217 bits (530), Expect = 3e-57
Identities = 99/143 (69%), Positives = 115/143 (80%)
Frame = +2
Query: 11 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPYKLRECLPLVIFLRNRLKYALTGNEVLK 190
G KKHLKRLNAP WMLDKLGG +AP+PS+GP+K RECLPL++ LRNRLKYALT EV+
Sbjct: 20 GLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVIS 79
Query: 191 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKL 370
I+ QR + VDGKVRTD TYPAGFMDVVSI K E FRL+YD KGRF +H I E+AK+KL
Sbjct: 80 ILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKL 139
Query: 371 CKVRRVATGPKSVPYLVTHDGRT 439
CKVR V G K +P+L T+DGRT
Sbjct: 140 CKVRSVQFGQKGIPFLNTNDGRT 162
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 214 bits (523), Expect = 2e-56
Identities = 96/143 (67%), Positives = 115/143 (80%)
Frame = +2
Query: 11 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPYKLRECLPLVIFLRNRLKYALTGNEVLK 190
G KKHLKRLNAPK WMLDKLGG +AP+PS+GP+K RECLPL++ +RNRLKYALT EV+
Sbjct: 4 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVIS 63
Query: 191 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKL 370
I+ QR + VDGKVRTD TYPAGFMDV+SI K E +RL+YD KGRF + + E+AK+KL
Sbjct: 64 ILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKL 123
Query: 371 CKVRRVATGPKSVPYLVTHDGRT 439
CKVR V G K +PYL T+DGRT
Sbjct: 124 CKVRSVQFGQKGIPYLNTYDGRT 146
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 214 bits (523), Expect = 2e-56
Identities = 96/143 (67%), Positives = 115/143 (80%)
Frame = +2
Query: 11 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPYKLRECLPLVIFLRNRLKYALTGNEVLK 190
G KKHLKRLNAPK WMLDKLGG +AP+PS+GP+K RECLPL++ +RNRLKYALT EV+
Sbjct: 4 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVIS 63
Query: 191 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKL 370
I+ QR + VDGKVRTD TYPAGFMDV+SI K E +RL+YD KGRF + + E+AK+KL
Sbjct: 64 ILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKL 123
Query: 371 CKVRRVATGPKSVPYLVTHDGRT 439
CKVR V G K +PYL T+DGRT
Sbjct: 124 CKVRSVQFGQKGIPYLNTYDGRT 146
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 187 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 53
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 233 TDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 400
T P + S E A + LIYD++G + + P++A L + V T P
Sbjct: 126 TAPEWTPNVQCYGSGEYARISYALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 432 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 304
P C + Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 219 TGKCGLTPRTRRDLWTLYPLRKQMSYSV*YMM*KEGSLSTVSHLKKPSTSCAR 377
+GK L R +RDL L RK S ++ + K L + K + SCA+
Sbjct: 2107 SGKSLLVERLKRDLENLKKSRKSASSTLRKALQKAAQLRLMEKEKNKTPSCAK 2159
>04_04_0950 + 29609484-29611025
Length = 513
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 201 CFTILSTSLPVSAYLSRFRRKITSGKHSRSL*GPVEGRGAYTP 73
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,369,505
Number of Sequences: 37544
Number of extensions: 275327
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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