Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N11
         (119 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         21   3.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    21   3.9  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    21   5.2  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    20   9.0  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 51  VILDLCPSRVR 19
           V LDLCP RV+
Sbjct: 911 VSLDLCPQRVK 921


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein
          protein.
          Length = 1133

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 79 F*VRTDDVNSNFRFMS 32
          F +RT D+N+ FRF++
Sbjct: 44 FFLRTFDLNNGFRFIA 59


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 94  TRHFLF*VRTDDVNSNFRFM 35
           TRHF      D+ N NF ++
Sbjct: 139 TRHFFCCCSGDNCNGNFSYL 158


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 58  VNSNFRFMSKQGPPAR 11
           VNS+  +M +  PPA+
Sbjct: 544 VNSSGNYMCRSNPPAQ 559


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,884
Number of Sequences: 2352
Number of extensions: 1866
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 20
effective length of database: 516,939
effective search space used:  9821841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)