Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N11
         (119 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   7.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     19   7.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    18   9.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    18   9.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    18   9.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    18   9.7  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 51  VILDLCPSRVRR 16
           ++   CP RVRR
Sbjct: 404 ILCACCPGRVRR 415


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 8   ASCRRTLLGHKSKITVNIISS 70
           A C R LL    K+ V  ISS
Sbjct: 339 AWCDRVLLNPTDKMLVQDISS 359


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 53  VNIISSNLK*KMSGGWNNSPW 115
           VNI        M G  NNS W
Sbjct: 197 VNIFLDKKGFHMDGYTNNSKW 217


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 4/5 (80%), Positives = 5/5 (100%)
 Frame = +1

Query: 85 NVWWL 99
          N+WWL
Sbjct: 4  NIWWL 8


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 8   ASCRRTLLGHKSKITVNIISS 70
           A+C    LGH + +  ++ SS
Sbjct: 364 ATCYALFLGHATNLIQSLDSS 384


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 8   ASCRRTLLGHKSKITVNIISS 70
           A+C    LGH + +  ++ SS
Sbjct: 332 ATCYALFLGHATNLIQSLDSS 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,357
Number of Sequences: 438
Number of extensions: 374
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 20
effective length of database: 137,583
effective search space used:  2614077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)