Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N10
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   108   4e-25
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   1.8  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    26   1.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   2.4  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    24   9.8  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    24   9.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   9.8  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  108 bits (259), Expect = 4e-25
 Identities = 58/116 (50%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
 Frame = +3

Query: 51  LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSLARTIGIAVDPRRRNKSVESLQINV 230
           +RP V+ PT+RY+ KVRAGRGFTL E++A+G++  +A TIGI VD RRRN+S ESLQ NV
Sbjct: 54  IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNV 113

Query: 231 QRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPIT 395
           +R+K Y A LI+FP K  +  KG+A +      T +   ++P+ Q A +  A+PIT
Sbjct: 114 ERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVEE-AKPIT 167


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 291 KGEANEEERKLATQLRGPLMPVQQTAPKSVARPIT 395
           + E N ++ +  TQ +    PV+++ PK  + P+T
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVT 504


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 147 NPSLARTIGIAVDPRRRNKSVESLQINV 230
           NPS+A    +A D    ++S+ES   NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 106  AEDLPYVK*GLLD*TLLWPEQLVLLLTHVDATNQWNHYRLMFKG*R-NIELVLFFSRRAR 282
            AED P V+  ++  T  W  +L     +VD   +    R +    R N+E+ + F+   R
Sbjct: 1458 AEDKPEVR-EMIKKT--WVRRLKGCQRNVDVWQRMLRIRSLVISPRDNMEMWIKFANLCR 1514

Query: 283  RY*RVKLMKKSANWLL 330
            +  R+ L KKS N LL
Sbjct: 1515 KSGRISLAKKSLNLLL 1530


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 201 KSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQL 335
           K+ E   +N  +L E RA L    K  ++LK +    E KLA+ L
Sbjct: 555 KNAELNSVN-SKLSEGRAHLETANKENEILKQQLELSESKLASLL 598


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 292 RVKLMKKSANWLLSCVV 342
           R KLM ++ NWLLS  +
Sbjct: 194 RRKLMARARNWLLSAAI 210


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 288 LKGEANEEERKLATQLRGPLMPVQQ 362
           L GE+N     L + +RGPL P Q+
Sbjct: 615 LYGESNPTTWGLWSMIRGPLAPYQK 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,393
Number of Sequences: 5004
Number of extensions: 28840
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)