Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N10
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   128   1e-30
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   128   2e-30
10_08_0694 - 19929918-19930292,19930633-19930866                       28   2.4  
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003...    28   3.1  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    27   4.1  
11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402...    27   5.5  
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913...    26   9.6  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  128 bits (310), Expect = 1e-30
 Identities = 59/113 (52%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
 Frame = +3

Query: 45  GPLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSLARTIGIAVDPRRRNKSVESLQI 224
           GPLRP+V+C T++Y+ K RAGRGFTL E++A+G+    A TIGI+VD RR+N+S+E LQ 
Sbjct: 52  GPLRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQA 111

Query: 225 NVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV 380
           NVQRLK Y+A+L++FP + +KV  G++  EE   ATQ++G  MP+ +   +SV
Sbjct: 112 NVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSV 164


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  128 bits (309), Expect = 2e-30
 Identities = 59/113 (52%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
 Frame = +3

Query: 45  GPLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSLARTIGIAVDPRRRNKSVESLQI 224
           GPLRP+V+C T++Y+ K RAGRGFTL E++A+G+    A TIGI+VD RR+N+S+E LQ 
Sbjct: 52  GPLRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQA 111

Query: 225 NVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV 380
           NVQRLK Y+A+L++FP + +KV  G++  EE   ATQ++G  MP+ +   +SV
Sbjct: 112 NVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSV 164


>10_08_0694 - 19929918-19930292,19930633-19930866
          Length = 202

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +3

Query: 192 RRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAP 371
           R N   + + + +   K     LI+ P G +VL+G   E++ K A ++   L  +++   
Sbjct: 54  RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEEAFV 113

Query: 372 K 374
           K
Sbjct: 114 K 114


>05_04_0020 -
           17199627-17199947,17200129-17200203,17200301-17200384,
           17200483-17200562,17201354-17201508,17202602-17203215
          Length = 442

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 217 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLRGPA 41
           + ST      GSTA    LA+  F+ E  +SRR   LPAR FV  +  +G +  GLR   
Sbjct: 73  SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLRVLV 129

Query: 40  AGRGATALAFFLV 2
            G GA  +   LV
Sbjct: 130 TG-GAGFVGSHLV 141


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 207 VESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQL 335
           ++SL+  VQR+ E R R +L P G        ++E R  A  +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224


>11_08_0005 +
           27536091-27536761,27539697-27539890,27540097-27540255,
           27540385-27541493
          Length = 710

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 258 DELYIPSTFEH*SVMIPLICCVYVGQQQYQLFWPKKGSIQKPL 130
           DEL + S  +H +V+  L CC+   +    L +   GS++K L
Sbjct: 472 DELRVQSLIQHENVVTLLGCCMETEEPTLILEFIPNGSLEKKL 514


>01_05_0720 -
           24588623-24588658,24588888-24589196,24589449-24591366,
           24591412-24591693,24592027-24592328
          Length = 948

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 362 LLYWHQGTTQLSSQFALFFISFTLQYLLALREKNKTSSIFLQP 234
           LLY     T L+S   LF      Q L+A+REK K  +   +P
Sbjct: 236 LLYGAPPVTVLASVLLLFMTFVLCQQLIAVREKIKRPAPLQRP 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,965
Number of Sequences: 37544
Number of extensions: 188426
Number of successful extensions: 421
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)