Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N10
(396 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 128 1e-30
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 48 3e-06
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 28 2.8
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 27 4.9
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 27 4.9
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 27 4.9
U80840-11|AAB37935.3| 392|Caenorhabditis elegans Hypothetical p... 26 8.5
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 26 8.5
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 26 8.5
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 128 bits (309), Expect = 1e-30
Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 1/118 (0%)
Frame = +3
Query: 45 GPLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSLARTIGIAVDPRRRNKSVESLQI 224
G LR VVRCP RY+TK R GRGF+L+E++A+G++ + ARTIGIAVD RR NK+ E L+
Sbjct: 53 GLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKA 112
Query: 225 NVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPIT 395
N RLKEY+A+LILFP K KG+++ EE K+A QLRG ++P+ T R +T
Sbjct: 113 NADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVT 170
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 47.6 bits (108), Expect = 3e-06
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3
Query: 45 GPLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLN 149
G LR VVRCP RY+TK R GRGF+L+E++A+ N
Sbjct: 53 GLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAEEN 87
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.9 bits (59), Expect = 2.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 62 CSLPYCALSYKSSCRQRIYPT 124
CS P C S +SSC+Q PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 261 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPIT 395
++F K VLK + + A +GPL+P Q+AP +V IT
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYIT 922
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 261 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPIT 395
++F K VLK + + A +GPL+P Q+AP +V IT
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYIT 922
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 261 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPIT 395
++F K VLK + + A +GPL+P Q+AP +V IT
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYIT 944
>U80840-11|AAB37935.3| 392|Caenorhabditis elegans Hypothetical
protein F08D12.12 protein.
Length = 392
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 82 RTVGQRTTGLRGPAAGRGATA 20
R QR GLRG AAGRG+ A
Sbjct: 45 RKKSQRGGGLRGGAAGRGSGA 65
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 276 GKKVLKGEANEEE---RKLATQLRGPLMPVQQTAPKSVARP 389
GKK KGEA+EEE LA+ V + AP++VA P
Sbjct: 101 GKKGKKGEADEEEDLDALLASFQEKDGPKVAEVAPEAVAAP 141
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 276 GKKVLKGEANEEE---RKLATQLRGPLMPVQQTAPKSVARP 389
GKK KGEA+EEE LA+ V + AP++VA P
Sbjct: 101 GKKGKKGEADEEEDLDALLASFQEKDGPKVAEVAPEAVAAP 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,427,915
Number of Sequences: 27780
Number of extensions: 161583
Number of successful extensions: 406
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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