Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N09
(216 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 0.45
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 25 1.8
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 24 2.4
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 23 4.1
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 23 5.5
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 23 5.5
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 23 5.5
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 23 7.2
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 22 9.6
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 22 9.6
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 22 9.6
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 0.45
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 30 HVYSKVISNWINYTQMP-SVYTFSRSDNEILQELL 131
H S N+++ + P Y ++DNE+LQELL
Sbjct: 764 HANSSTPMNYVSQPESPPQSYESIQNDNELLQELL 798
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 185 SLNRPLLSGGSTTRTKHTQQLLK 117
SLNR +SGG T R + ++L K
Sbjct: 173 SLNRENISGGRTAREQKVKELSK 195
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 24.2 bits (50), Expect = 2.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 137 HT-QQLLKNLIITS*ERVYRRHLCVIDPITYYFTINVIICNDCSPR 3
HT +L N +++ ERV V P+ + F + V DCSP+
Sbjct: 39 HTLANMLANQLLSD-ERVLFAGYKVPHPLNHNFILRVQTVEDCSPK 83
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 33 VYSKVISNWINYTQMPSVYTFS 98
+Y I NW+N + ++ TFS
Sbjct: 666 IYIPDIDNWLNVLPLTAITTFS 687
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 23.0 bits (47), Expect = 5.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 21 ANNHVYSKVISNWINYTQMPSVYTFSRSDNEILQ 122
AN V + V N+INYT+ FS ++ E LQ
Sbjct: 66 ANAQVKNWVCDNYINYTE-KLTEIFSMANVEALQ 98
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 59 PITYYFTINVIICNDCSPR 3
P Y I+ I CNDC+ R
Sbjct: 336 PYPYNTWISTIRCNDCNSR 354
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 23.0 bits (47), Expect = 5.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 33 VYSKVISNWINYTQMPSVYTFSRSDNEILQELLRVFSSGRGTAREQWSIQAAVLVDSG 206
+Y +++ + ++ +P Y S L L F+ GRG R + +AAV V +G
Sbjct: 65 LYDQIMDHSFSFNVIPPRYRLSG-----LSSLDTYFAMGRGMQRAATADKAAVDVPAG 117
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/42 (21%), Positives = 19/42 (45%)
Frame = +3
Query: 48 ISNWINYTQMPSVYTFSRSDNEILQELLRVFSSGRGTAREQW 173
I N+T + S + +++ LLR+ S+ ++ W
Sbjct: 1026 IKTLTNFTNLHSTSEIKLRNTMVIKTLLRIASTEGNNLKDSW 1067
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 33 VYSKVISNWINYTQMPSVYTFSRSD 107
+YS I N ++ Q P+VY SD
Sbjct: 512 LYSLEIQNLLSQNQFPTVYFTKISD 536
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 185 SLNRPLLSGGSTTRTKHTQQLLKN 114
S++ PL+ S + H+Q+LL+N
Sbjct: 169 SVDSPLIVHSSKFMSDHSQKLLRN 192
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = +3
Query: 57 WINYTQMPSVYTFSRSDNEILQELLRVFSSGRGTAREQW 173
WI T PS + S ++ SSG G+ + W
Sbjct: 229 WIPATSKPSRHASHSSIGDLTTITQSSISSGSGSFKPSW 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 853,039
Number of Sequences: 5004
Number of extensions: 12968
Number of successful extensions: 43
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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