Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N09
         (216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67...    27   2.1  
10_01_0068 - 874774-875175                                             26   3.6  
09_03_0024 - 11627177-11627584                                         26   3.6  
03_01_0287 + 2223014-2223413,2223540-2223811                           26   3.6  
01_04_0087 + 15927483-15927836,15928374-15928460,15929066-15929077     26   3.6  
11_02_0030 - 7546909-7547514                                           26   4.8  
03_05_0794 + 27764627-27765142                                         25   6.3  
03_04_0236 - 19187900-19188106,19188344-19188697                       25   6.3  
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302...    25   6.3  

>03_01_0084 +
           676538-676669,677828-677959,678085-678210,678820-678882,
           678964-679061,679133-679340,679859-679930,680016-680108,
           680297-680398,680568-680665,681059-681140,681274-681362,
           681960-682065,682145-682210,682527-682633,682907-683027,
           683226-683411,683490-683789,683887-683967,684061-684225,
           684297-684383,684476-684601,684750-684830,684917-684988,
           685353-685364
          Length = 934

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 111 EILQELLRVFSSGRGTAREQWSIQAAVLVD 200
           EI++ELL+  ++     RE+ S++AA+L +
Sbjct: 395 EIVEELLQYLNTAEFAMREELSLKAAILAE 424


>10_01_0068 - 874774-875175
          Length = 133

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 105 DNEILQ----ELLRVFSSGRGTAREQWSIQAAVLVDSGGWD 215
           D+E+LQ    E+  V         EQW  +AAV+ D GG D
Sbjct: 71  DDELLQASMHEVCEVKEMVYARGIEQWLTEAAVIDDDGGGD 111


>09_03_0024 - 11627177-11627584
          Length = 135

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 105 DNEILQ----ELLRVFSSGRGTAREQWSIQAAVLVDSGGWD 215
           D+E+LQ    E+  V         EQW  +AAV+ D GG D
Sbjct: 73  DDELLQASMHEVCEVKEMVYARGIEQWLTEAAVIDDDGGGD 113


>03_01_0287 + 2223014-2223413,2223540-2223811
          Length = 223

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +3

Query: 105 DNEILQELLRVFSSGR----GTAREQWSIQAAVLVDSGGWD 215
           DNE+LQ  +      +        EQW  +AAV+ D GG D
Sbjct: 73  DNELLQASMHEGCEAKEMVYAQGIEQWLTEAAVINDDGGGD 113


>01_04_0087 + 15927483-15927836,15928374-15928460,15929066-15929077
          Length = 150

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +3

Query: 105 DNEILQ----ELLRVFSSGRGTAREQWSIQAAVLVDSGGWD 215
           DNE+LQ    E   V         EQW  +AAV+ D GG D
Sbjct: 73  DNELLQASMHEGCEVKEMVYAQGIEQWLTEAAVIDDDGGGD 113


>11_02_0030 - 7546909-7547514
          Length = 201

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 135 VFSSGRGTAREQWSIQAAVLVDSGGWD 215
           V+  G  T  ++W+ QAA L D   WD
Sbjct: 174 VWEGGGETDNDEWAQQAASLWDPSVWD 200


>03_05_0794 + 27764627-27765142
          Length = 171

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 165 EQWSIQAAVLVDSGGWD 215
           EQW  +AAV+ D GG D
Sbjct: 133 EQWLTEAAVIDDDGGGD 149


>03_04_0236 - 19187900-19188106,19188344-19188697
          Length = 186

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 165 EQWSIQAAVLVDSGGWD 215
           EQW  +AAV+ D GG D
Sbjct: 97  EQWLTEAAVIDDDGGGD 113


>02_04_0080 -
           19529575-19529643,19529756-19529938,19530061-19530210,
           19530297-19530379,19530497-19530599,19530709-19530918,
           19531023-19531183,19531275-19531351,19531483-19531610,
           19531695-19531935,19532047-19532180,19532261-19532435,
           19532587-19532656,19532746-19532803,19532887-19532994,
           19533088-19533283,19533381-19533727,19534008-19534034,
           19534334-19534336
          Length = 840

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 15  IVANNHVYSKVISNWINYTQMPS--VYTFSRSDNEILQELLRVFSSGRGTAREQW 173
           +V  NH++       I + QM    V  F    N+ ++E +R+F    G   E W
Sbjct: 381 MVPENHLHLYYKKGPIGHDQMAEERVEDFGSRFNDAIKEFVRLFEEVTGNEFEPW 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,772,906
Number of Sequences: 37544
Number of extensions: 86352
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)