Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N09
         (216 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF399530-1|AAK95015.1|  217|Homo sapiens olfactory receptor prot...    28   6.2  
AB065738-1|BAC05959.1|  312|Homo sapiens seven transmembrane hel...    28   6.2  

>AF399530-1|AAK95015.1|  217|Homo sapiens olfactory receptor
           protein.
          Length = 217

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 24  NNHVYSKVISNWINYTQMPSVYTFSRSDNEILQELLRVFS-SGRGTA 161
           N  VY KV+   + +T + S+     S   IL  +LR+ S SGR  A
Sbjct: 124 NTRVYEKVLLGVVGFTVLSSILAILISYVNILLAILRIHSASGRHKA 170


>AB065738-1|BAC05959.1|  312|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 24  NNHVYSKVISNWINYTQMPSVYTFSRSDNEILQELLRVFS-SGRGTA 161
           N  VY KV+   + +T + S+     S   IL  +LR+ S SGR  A
Sbjct: 191 NTRVYEKVLLGVVGFTVLSSILAILISYVNILLAILRIHSASGRHKA 237


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,385,539
Number of Sequences: 237096
Number of extensions: 486209
Number of successful extensions: 733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 76,859,062
effective HSP length: 50
effective length of database: 65,004,262
effective search space used: 1365089502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)