Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N09
(216 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97003-5|AAB52272.1| 353|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z35663-16|CAA84726.2| 462|Caenorhabditis elegans Hypothetical p... 25 5.5
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 25 7.3
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 25 7.3
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 25 7.3
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 25 7.3
AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical ... 25 7.3
Z48621-12|CAA88545.2| 425|Caenorhabditis elegans Hypothetical p... 25 9.7
AF067222-3|AAC17019.1| 292|Caenorhabditis elegans Hypothetical ... 25 9.7
>U97003-5|AAB52272.1| 353|Caenorhabditis elegans Hypothetical
protein F47C10.7 protein.
Length = 353
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 21 ANNHVYSKVISNWINYTQMPSVYTFSRSDNEILQELLR-VFSSGRGTAREQWSIQAA 188
A N + +V+ ++NYT+ + F S+N L+E+++ F SG E+ I A
Sbjct: 105 ATNALIQEVL--YLNYTKRYKLCNFYTSENPTLEEMVQTTFWSGMKRKTEKQEISVA 159
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 135 HAATLEESHYHFVRTCIQ 82
H ++ E H H RTCIQ
Sbjct: 1057 HLSSKSEEHKHLARTCIQ 1074
>Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical
protein R03D7.1 protein.
Length = 1249
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 182 LNRPLLSGGSTTRTKHT 132
LN PLL GG+TT HT
Sbjct: 842 LNIPLLIGGATTSKTHT 858
>Z35663-16|CAA84726.2| 462|Caenorhabditis elegans Hypothetical
protein T04A8.3 protein.
Length = 462
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 212 PTARIN*DCSLNRPLLSGGSTTRTKHTQQLLKNLIITS*ERVYRR 78
P A N L +P+ GG TQ+ +K L T+ R Y+R
Sbjct: 238 PLADHNYCTELMKPVFRGGEAQSALPTQEFVKKLTGTNGFREYKR 282
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 63 NYTQMPSVY--TFSRSDNEILQELLRVFSSGRGTAREQWSIQAAV 191
N+ + S Y T DNE+L L++ S+G + +W+ A +
Sbjct: 3338 NWGEWSSDYFSTTRNDDNELLGGSLKLLSAGHDNLKVKWTPPAVI 3382
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 63 NYTQMPSVY--TFSRSDNEILQELLRVFSSGRGTAREQWSIQAAV 191
N+ + S Y T DNE+L L++ S+G + +W+ A +
Sbjct: 3338 NWGEWSSDYFSTTRNDDNELLGGSLKLLSAGHDNLKVKWTPPAVI 3382
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 63 NYTQMPSVY--TFSRSDNEILQELLRVFSSGRGTAREQWSIQAAV 191
N+ + S Y T DNE+L L++ S+G + +W+ A +
Sbjct: 3338 NWGEWSSDYFSTTRNDDNELLGGSLKLLSAGHDNLKVKWTPPAVI 3382
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 63 NYTQMPSVY--TFSRSDNEILQELLRVFSSGRGTAREQWSIQAAV 191
N+ + S Y T DNE+L L++ S+G + +W+ A +
Sbjct: 3338 NWGEWSSDYFSTTRNDDNELLGGSLKLLSAGHDNLKVKWTPPAVI 3382
>AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical
protein F57B10.5 protein.
Length = 203
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 162 WRFHDQN*THAATLEESH 109
W+F DQN HAA + +H
Sbjct: 109 WQFGDQNALHAAVTQGAH 126
>Z48621-12|CAA88545.2| 425|Caenorhabditis elegans Hypothetical
protein R07B1.8 protein.
Length = 425
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 93 TCIQKAFVCN*SNYLLLYYKRDYLQR 16
TC ++A N S Y+ L Y RDY R
Sbjct: 218 TCYRQALDLN-SEYIQLIYNRDYALR 242
>AF067222-3|AAC17019.1| 292|Caenorhabditis elegans Hypothetical
protein H11E01.1 protein.
Length = 292
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 42 KVISNWINYTQMPSVYTFSRSDNEILQELLRVFSSG 149
K ISN +N ++P + + +D+ LQ+L+ SSG
Sbjct: 125 KFISNEMNGLEIPVTWFSASTDDIHLQKLINNCSSG 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,786,955
Number of Sequences: 27780
Number of extensions: 73648
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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