Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N08
         (249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   1.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   1.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    24   2.6  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    24   3.4  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    24   3.4  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    23   4.5  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    23   4.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    23   5.9  

>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 222 VKTVCSTYHDPVVLYHQFFIQVSQKLETNY 133
           V+ +C  Y DPVV +     +V  +LE+ Y
Sbjct: 491 VQPICYYYKDPVVSHAPGAAEVVSELESGY 520


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 198 HDPVVLYHQFFIQVS 154
           HDPVVL+H F I+ S
Sbjct: 421 HDPVVLFHYFQIRNS 435


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 228 LCVKTVCSTYHDPV-VLYHQFFIQVSQKLETNYS*IK 121
           +C+        DP  VL+H F +  + K ET Y  +K
Sbjct: 198 ICISVTVRVLQDPTGVLWHSF-VNYNSKKETGYVGLK 233


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 33  KQLIECSKETYKQ*NITRYKNKLHYF 110
           K L+E +KE     NIT  K  + YF
Sbjct: 740 KSLVEAAKENRMPINITDLKEGIKYF 765


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 240 PSKLLCVKTVCSTYHDPVVL 181
           P ++L V  V STYH P +L
Sbjct: 236 PEQVLAVHDVSSTYHVPQLL 255


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 58  SLEHSISCF*SHQQYT 11
           SL H + CF  H +YT
Sbjct: 340 SLLHELECFIQHHEYT 355


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -1

Query: 213 VCSTY---HDPVVLYHQFFIQVSQKLE 142
           +C+ Y   +DPV  YH+F  Q   +L+
Sbjct: 449 ICNAYEEENDPVAQYHKFQAQKYDRLQ 475


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 221  LKLFVQHITTLLFFTINSLYKFRKN*KLITVKSKSAKK 108
            +++    I TLL   +  LYK  K+ K +  K K   K
Sbjct: 1235 IEVAYSRIATLLGQRLKQLYKLEKDIKRMATKKKMITK 1272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 921,066
Number of Sequences: 5004
Number of extensions: 14408
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)