Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N08
         (249 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674...    26   4.8  
06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492...    25   6.4  
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515...    25   6.4  

>11_06_0618 +
           25565780-25566064,25566855-25567046,25567144-25567416,
           25567636-25567738,25568273-25568391,25568615-25568782,
           25568908-25569386,25569742-25569850,25569905-25570070,
           25571405-25571433
          Length = 640

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 216 TVCSTYHDPVVLYHQFFIQVSQKLE 142
           T+C   H+P+ +YH     +  ++E
Sbjct: 616 TICHLIHNPITIYHSIRCYIMGRME 640


>06_03_0812 +
           24847716-24847988,24848123-24848221,24848977-24849229,
           24850064-24850174,24850558-24850694,24850821-24850934,
           24851025-24851224,24851366-24851560,24851636-24851795
          Length = 513

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 242 ILQNFFVLKLFVQHITTLLFFTI 174
           ++ NFF+++  + HI T +F+ +
Sbjct: 339 VIYNFFLVRKIIGHIVTFVFYCL 361


>02_01_0690 -
           5152224-5152386,5152490-5152687,5152815-5153014,
           5153122-5153223,5153414-5153550,5153688-5153798,
           5156092-5156344,5157954-5158052,5158449-5158739
          Length = 517

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 242 ILQNFFVLKLFVQHITTLLFFTI 174
           ++ NFF+++  + HI T  F+ +
Sbjct: 341 VIYNFFLIRKIIAHIVTFAFYCL 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,889,137
Number of Sequences: 37544
Number of extensions: 64137
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)