Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N08
         (249 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    32   0.047
Z70757-10|CAE18045.2|  117|Caenorhabditis elegans Hypothetical p...    27   1.8  
U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein...    27   2.3  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    25   5.4  
Z81497-6|CAB04082.2|  604|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z75953-5|CAB00102.2|  604|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical pr...    25   7.1  
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    25   7.1  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 32.3 bits (70), Expect = 0.047
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = -2

Query: 224 VLKLFVQHITTLLFFTINSLYKFRKN*KLITVKSKSAKKIV*FIFIPRNILLFICFFR 51
           ++ LF+ ++T   +F +++L K ++    I      A K+  F+FI   I+LF C  R
Sbjct: 23  LVSLFISYLTLPFYFYVHNLKKHKEKNLPIVKFFYKAVKLSYFVFIVLAIVLFFCISR 80


>Z70757-10|CAE18045.2|  117|Caenorhabditis elegans Hypothetical
           protein ZK287.9 protein.
          Length = 117

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 225 CVKTVCSTYHDPVVLYHQFFIQVS 154
           C K +C++ + P+ L+  FFI VS
Sbjct: 89  CQKDMCNSVNSPMALFSVFFIVVS 112


>U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein 7
           protein.
          Length = 556

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 52  LKKHINNKILRGIKINYTIFLADFDLTVISF*FLRNLYKELMVKN 186
           LKK + +KILR + I Y+ +   F   V    FL N+  +  + N
Sbjct: 195 LKKIVPHKILRFLNIKYSAYYVTFIYFVAKVAFLLNVILQSKLLN 239


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 91  LYLVIFYCLYVSLEHSISCF*SHQQYTLLV 2
           +++  FYC+ V+  HS+ CF    +Y  +V
Sbjct: 302 VFISFFYCI-VATSHSVICFALSSEYRQVV 330


>Z81497-6|CAB04082.2|  604|Caenorhabditis elegans Hypothetical
           protein F10C2.3 protein.
          Length = 604

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 191 LLFFTINSLYKFRKN*KLITVKSKSAKKIV*F 96
           L FF+++   K RK+ KL+    K++KK+  F
Sbjct: 406 LPFFSVSLPKKLRKDSKLVDTVRKNSKKLTSF 437


>Z75953-5|CAB00102.2|  604|Caenorhabditis elegans Hypothetical
           protein F10C2.3 protein.
          Length = 604

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 191 LLFFTINSLYKFRKN*KLITVKSKSAKKIV*F 96
           L FF+++   K RK+ KL+    K++KK+  F
Sbjct: 406 LPFFSVSLPKKLRKDSKLVDTVRKNSKKLTSF 437


>Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical
           protein R07E5.13 protein.
          Length = 160

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 86  PRNILLFICFFRTF 45
           PRN+LLF C F  F
Sbjct: 77  PRNLLLFACHFANF 90


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 225 CVKTVCSTYHDPVVLYHQFFIQVSQKLETNYS*IK 121
           C+++ C   HD V  +H  +  V  KL+ N S +K
Sbjct: 114 CIESYCKLLHDRVT-FHNKYPVVPGKLDLNDSQLK 147


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 225 CVKTVCSTYHDPVVLYHQFFIQVSQKLETNYS*IK 121
           C+++ C   HD V  +H  +  V  KL+ N S +K
Sbjct: 114 CIESYCKLLHDRVT-FHNKYPVVPGKLDLNDSQLK 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,006,923
Number of Sequences: 27780
Number of extensions: 78278
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)