Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N08
         (249 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   1.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   1.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   1.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   2.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   4.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   4.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   9.3  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 245 KILQNFFVLKLFVQHI-TTLLFFTINSLY 162
           +I+QNFF++ L V  +   +L    N  Y
Sbjct: 68  RIVQNFFIVSLAVADLAVAILVMPFNVAY 96


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 245 KILQNFFVLKLFVQHI-TTLLFFTINSLY 162
           +I+QNFF++ L V  +   +L    N  Y
Sbjct: 68  RIVQNFFIVSLAVADLAVAILVMPFNVAY 96


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 245 KILQNFFVLKLFVQHI-TTLLFFTINSLY 162
           +I+QNFF++ L V  +   +L    N  Y
Sbjct: 68  RIVQNFFIVSLAVADLAVAILVMPFNVAY 96


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +2

Query: 137 LVSSFCETCI 166
           +V+S+C+TCI
Sbjct: 293 IVTSYCKTCI 302


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 48  CSKETYKQ*NITRYKNKLH 104
           C+K   +  N  +YKN+ H
Sbjct: 417 CAKSNNQNNNQNKYKNQAH 435


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 211 LFNISRPCCSLPSILYTSF 155
           L  I  PCC L  + + SF
Sbjct: 245 LIQIYIPCCMLVIVSWVSF 263


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 211 LFNISRPCCSLPSILYTSF 155
           L  I  PCC L  + + SF
Sbjct: 245 LIQIYIPCCMLVIVSWVSF 263


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 107 IV*FIFIPRNI 75
           I+  IFIPRNI
Sbjct: 411 IMLIIFIPRNI 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,049
Number of Sequences: 438
Number of extensions: 1025
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)