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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N07
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   134   1e-33
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    66   5e-13
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    62   1e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    43   7e-06
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   0.46 
SPAC343.08c |mrp17||mitochondrial ribosomal protein subunit Mrp1...    26   0.61 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   1.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   1.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   1.9  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    24   2.4  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    24   3.2  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    23   4.3  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    23   4.3  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    23   5.6  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    23   5.6  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    23   5.6  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    23   7.5  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    23   7.5  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    23   7.5  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    23   7.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    23   7.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   7.5  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    23   7.5  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    23   7.5  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    23   7.5  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    22   9.9  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    22   9.9  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    22   9.9  
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    22   9.9  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    22   9.9  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    22   9.9  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    22   9.9  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  134 bits (325), Expect = 1e-33
 Identities = 58/78 (74%), Positives = 71/78 (91%)
 Frame = +2

Query: 8   EWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEG 187
           EWIP+NV  AVC +PPK LKMS+TFIGN+T+IQE+F+R+ +QFSAMFRRKAFLHWYTGEG
Sbjct: 343 EWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEG 402

Query: 188 MDEILFNEAESSVDDLVS 241
           MDE+ F EAES+++DLVS
Sbjct: 403 MDEMEFTEAESNMNDLVS 420


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 66.5 bits (155), Expect = 5e-13
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
 Frame = +2

Query: 8   EWIPNNVKTAVCDIPPKGLKMSST--------FIGNTTAIQELFKRISEQFSAMFRRKAF 163
           +W P   K  +CD PP+ ++ S           + NTT+I E + R+  +F  M+ ++AF
Sbjct: 345 DWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAF 404

Query: 164 LHWYTGEGMDEILFNEAESSV 226
           +HWY GEGM+E  F+EA   +
Sbjct: 405 VHWYVGEGMEEGEFSEAREDL 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 61.7 bits (143), Expect = 1e-11
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
 Frame = +2

Query: 8   EWIPNNVKTAVCDIPPKGLKMSST--------FIGNTTAIQELFKRISEQFSAMFRRKAF 163
           +W P   K  +C  PP+ +  S           + NTT+I E + R+  +F  M+ ++AF
Sbjct: 349 DWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAF 408

Query: 164 LHWYTGEGMDEILFNEAESSV 226
           +HWY GEGM+E  F+EA   +
Sbjct: 409 VHWYVGEGMEEGEFSEAREDL 429


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 42.7 bits (96), Expect = 7e-06
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +2

Query: 11  WIPNNVKTAVCDIPP---KGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTG 181
           W P +++ A+    P      ++S   + N T+I  LFKR  +Q+  + +R AFL  Y  
Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKK 410

Query: 182 EGMDEILFNEAESSVD 229
           E + E   NE +SS D
Sbjct: 411 EAIFEDDLNEFDSSRD 426


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 0.46
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +2

Query: 2   HDEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELFKRISEQF 136
           HD+ +P  V  ++ ++PP+ ++   ++ G     +++F+   E+F
Sbjct: 588 HDQ-VPRQVFASMLNLPPEVIRRKGSWTGKKDPREDMFRSRFEKF 631


>SPAC343.08c |mrp17||mitochondrial ribosomal protein subunit
           Mrp17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 26.2 bits (55), Expect = 0.61
 Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 156 LRLNIAENCSDILLNSSWMAV-VLPMNVEDILRPLGGMSHTAVF 28
           L +NIA+NC   +L++  + V V  M ++++ +P+  ++ +  F
Sbjct: 22  LAMNIAKNCGRAILDNKGVVVDVESMGLKELAKPIKKLNQSYSF 65


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 89  NTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDE 196
           N++ IQ L K I+   +  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 83   IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGM 190
            + N   +  L+K + E+FS +F RK  L WY   G+
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGV 1737


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 12/61 (19%), Positives = 26/61 (42%)
 Frame = +2

Query: 59  GLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEILFNEAESSVDDLV 238
           G+   S+ + N       +KR+  ++     R+ F+   T E        +   ++D+LV
Sbjct: 18  GISFFSSTLSNPLTYSRSYKRVLARWGIRVHRQRFVSPRTEEAAARTASGDVSKALDELV 77

Query: 239 S 241
           +
Sbjct: 78  T 78


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 5   DEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELFKRISE 130
           DE  PNN  TA+    P+     S  +GN   +  +  R+ E
Sbjct: 73  DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQE 114


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/56 (19%), Positives = 29/56 (51%)
 Frame = -3

Query: 228 STLLSASLNKISSMPSPVYQCKKALRLNIAENCSDILLNSSWMAVVLPMNVEDILR 61
           S   S ++ ++ S P    + +  L +NI ++C D   N   +  ++ ++++ +L+
Sbjct: 2   SDTTSLNVPELESPPIERVELESLLVMNIIKHCRDSFPNMGTIGQLVGIDIDGVLQ 57


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 78  VEDILRPLGGMSHTAVFTLFGIHS 7
           V++++  +G   + A+ TLFG HS
Sbjct: 162 VQELIPQIGTGHYRAIETLFGCHS 185


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 45  TSRLKASRCPRHSSVTPQPSRSCLREYQSSSPLCSDARLSCTGTPARAWTRFCSTR 212
           +S L +S     SS TP  + S      SSS   S +  S + + +R+ +R  S R
Sbjct: 125 SSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHR 180


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 36  PCVTSRLKASRCPRHSSVTPQPSRSCLREYQSSS 137
           P + +R+  +R   H S+TP    SC + Y+ S+
Sbjct: 51  PSIFARILDARAG-HFSITPIEQTSCKQMYEPST 83


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 108 SWMAVVLPMNVEDILRPLGGMSHTAVFTL 22
           SW+   L  N+ED L+ +G + + +  T+
Sbjct: 491 SWLYNHLQENIEDFLQNIGSLLNISAATI 519



 Score = 22.2 bits (45), Expect = 9.9
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = +3

Query: 72  PRHSSVTPQPSRSCLREYQSSSPLCS 149
           P H+S+     R C + Y     +C+
Sbjct: 845 PLHASLNTSEQRRCFKTYTKRKIICA 870


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 118 ENIRAVLRYVQTQGFLALVHRRGHGRDFVQRGGEQCR*FGF 240
           + I  V+++ +  G   LVH      D VQ  GE+   F F
Sbjct: 474 KEISDVVKFQEEVGLDVLVHGEPERNDMVQYFGERMEGFVF 514


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 240 ETKSSTLLSASLNKISSMPSPVYQCKKALRL-NIAENCSDIL 118
           ETK S ++ A  N IS   +  YQ   A+ + ++  N S I+
Sbjct: 217 ETKFSKIIDAIPNYISVTEAAYYQADGAIPIQDLGSNSSGIV 258


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 216 SASLNKISSMPSPVYQCKKALRLNIAEN 133
           ++SLNK+++ P+PV    K + L   EN
Sbjct: 512 TSSLNKVAAAPAPV---PKPVNLKSVEN 536


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = -3

Query: 207 LNKISSMPSPVYQCKKALRLNIAENCSDILLNSSWMAVVL 88
           + ++SS+   V+QCK   + +   + S+ ++N    A+++
Sbjct: 307 ITEVSSLDEFVFQCKDGDKFDELFSTSEEIMNKLLPAIIV 346


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 32  TAVCDIPPKGLKMSSTFI 85
           TA+C+I P+ +  SS ++
Sbjct: 825 TAICEIDPEDIVTSSAYV 842


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 3   TMNGSRIT*RPPCVTSRLKASRCPRHSSVTPQPS 104
           T+  SR    PP   +  +A+   R +SV+PQPS
Sbjct: 463 TIQTSREVAPPPSSINSNRAASPFRPTSVSPQPS 496


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 81  SSVTPQPSRSCLREYQSSSPLCSDARLSCT 170
           S+ TP P  S      SSSPL S +  SCT
Sbjct: 366 STSTPPPPASTSSTGTSSSPLLSTS-TSCT 394


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 202 QNLVHALAGVPVQESLASEHSGELL*YSLKQLLDGCGVTDECRG 71
           + LV++  GVP+Q    SE +  +L  S K   D   +   C G
Sbjct: 131 EGLVYSQDGVPLQAFSGSERTDFILPDSWKTTEDTFYIEMACNG 174


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 53  PKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEILFNEAESS--V 226
           P  ++  S+++ +TT   ++   +S+  S +    ++       GMD I+F   ESS   
Sbjct: 227 PNVIRYFSSWVESTTEATQMPIVMSKNSSRVLGTSSYCDV---NGMDSIIFEPTESSALT 283

Query: 227 DDLV 238
           DD++
Sbjct: 284 DDIL 287


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 96  QPSRSCLREYQSSSPLC 146
           QP RS LR   SS P C
Sbjct: 621 QPKRSFLRRLFSSEPSC 637


>SPAC6B12.04c |||aminotransferase class I and
          II|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 5  DEWIPNNVKTAVCDIPPKGL 64
          D W   N  TA C +PP  L
Sbjct: 18 DVWTLVNQATAECKVPPVSL 37


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 50  PPKGLKMSSTFIGNTTAIQELFKRISE 130
           PP+   M+ST+      + + F RI E
Sbjct: 265 PPQASDMASTYCACKVIVYQFFLRIPE 291


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +2

Query: 83  IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEILFNEAESSVD 229
           + +   ++ L K   E   A+ R++     Y  +  D  LFN +  S+D
Sbjct: 656 VADQKQLKSLTKNHQEIEKAIHRKERQRDQYMSQEEDSKLFNRSRVSID 704


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 14  IPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQ 106
           +P N   A+ +I   G K S TF+   ++I+
Sbjct: 140 LPTNAYFAIDEIEDDGSKSSRTFVHLPSSIE 170


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 120 EYQSSSPLCSDARLSCTGTPA 182
           EY  ++PL S AR S  G  A
Sbjct: 40  EYSETAPLYSSARASIEGEEA 60


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 50  PPKGLKMSSTFIGNTTAIQELFKRISE 130
           PP+   M+ST+      + + F RI E
Sbjct: 265 PPQASDMASTYCACKVIVYQFFLRIPE 291


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +3

Query: 99  PSRSCLREYQSSSPLCSDARLSCTGTPARAWTRF--CSTRRRAV 224
           P   CL +      +  DA+ SC   P  +      CS + + V
Sbjct: 14  PGNKCLAKLNELESILKDAKKSCLKDPTTSMKELVACSEKTQQV 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,078,212
Number of Sequences: 5004
Number of extensions: 19361
Number of successful extensions: 82
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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