Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N06
(171 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 61 2e-11
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 61 2e-11
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 61 2e-11
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 0.44
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 25 1.0
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 24 2.3
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 24 3.1
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 23 4.1
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 23 5.4
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 23 5.4
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 22 9.4
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe... 22 9.4
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 22 9.4
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 22 9.4
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 61.3 bits (142), Expect = 2e-11
Identities = 29/56 (51%), Positives = 39/56 (69%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSIKSG 169
QVI+LNHPGQIS GY+PV H+ H + +K+DRR+GK E++PK +KSG
Sbjct: 341 QVIILNHPGQISAGYSPVLDC-HTAHIACKFAELIEKIDRRSGKKIEESPKFVKSG 395
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 61.3 bits (142), Expect = 2e-11
Identities = 29/56 (51%), Positives = 39/56 (69%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSIKSG 169
QVI+LNHPGQIS GY+PV H+ H + +K+DRR+GK E++PK +KSG
Sbjct: 341 QVIILNHPGQISAGYSPVLDC-HTAHIACKFAELIEKIDRRSGKKIEESPKFVKSG 395
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 61.3 bits (142), Expect = 2e-11
Identities = 29/56 (51%), Positives = 39/56 (69%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSIKSG 169
QVI+LNHPGQIS GY+PV H+ H + +K+DRR+GK E++PK +KSG
Sbjct: 341 QVIILNHPGQISAGYSPVLDC-HTAHIACKFAELIEKIDRRSGKKIEESPKFVKSG 395
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 0.44
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Frame = +2
Query: 23 PGQISNGYTPVFGLP---HSPHS 82
P QISNG T V GLP ++PHS
Sbjct: 354 PQQISNGPTAVNGLPMNSYTPHS 376
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 171 SPDLMDLGLSSVDLPVRRST 112
+PDL D+ LSSVD P++ +T
Sbjct: 30 APDLADVLLSSVDQPLKVNT 49
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 98 KSKKKVDRRTGKSTEDNPKSI 160
K KKK DR K ++PKS+
Sbjct: 678 KIKKKFDRENEKLAAEDPKSV 698
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 3.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 102 DFGQICRLCGLCGNPNT 52
++ Q+CR+ + GNP T
Sbjct: 336 EYNQLCRIVDMLGNPPT 352
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 72 LCGNPNTGVYPFDI 31
+C +P+TG+Y FD+
Sbjct: 264 ICIDPSTGLYAFDL 277
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +2
Query: 20 HPGQISNGYTPVFGLPHSPHSLQICPKS 103
HP TP + H PH+++ KS
Sbjct: 191 HPAAAPQSLTPFYIQVHDPHTVKEITKS 218
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 18 ITQVKYQTDTHLYLDCHTAHIACKFA 95
+TQ+KY TD L +C + K++
Sbjct: 601 MTQIKYMTDGMLQRECLVDPLLSKYS 626
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 147 LSSVDLPVRRSTFFFDFGQICRLCGL 70
LSSV LP + D+ RLC +
Sbjct: 234 LSSVTLPKSEDEPYLDYSAARRLCSI 259
>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 22.2 bits (45), Expect = 9.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 168 PDLMDLGLSSVDLPVRRSTFFFDFGQICRLCGLCGNPNTGV 46
PDL++L S LP+ + F +G L G N+ V
Sbjct: 112 PDLLELSSSPRRLPILFAAFCLLWGTCAVLAIQYGKQNSNV 152
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -1
Query: 96 GQICRLCGLCGNPNT 52
G+ C CGL NP T
Sbjct: 268 GEQCEYCGLDKNPET 282
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +2
Query: 26 GQISNGYTPVF-----GLPHSPHSLQICPKSKKKVDRRTGKSTEDN 148
G SNGY PVF + ++ + Q+ + K D+ +G ++ ++
Sbjct: 50 GASSNGYDPVFMSDRMKMRYNEITAQLHKEQSLKEDKESGSNSSES 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 787,617
Number of Sequences: 5004
Number of extensions: 12906
Number of successful extensions: 52
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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