Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N06
(171 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 58 8e-10
03_01_0547 + 4093196-4093657,4094267-4095148 58 8e-10
03_01_0544 + 4082528-4082989,4083585-4084466 58 8e-10
03_01_0543 + 4076981-4077442,4078145-4079026 58 8e-10
01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456... 29 0.70
03_06_0697 + 35607040-35607417 27 2.1
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 27 2.8
01_03_0005 + 11568545-11569119,11569179-11569191 26 3.8
08_02_0623 - 19429029-19430207 26 5.0
06_01_0484 + 3439365-3439474,3439574-3439699,3439700-3439851,344... 26 5.0
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 26 5.0
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 26 5.0
02_02_0311 - 8853425-8853633,8853912-8854083 26 5.0
07_01_0919 - 7742718-7742824,7743024-7743219 25 6.6
06_03_0543 + 21967787-21970261 25 6.6
04_04_1108 + 30961600-30962013,30963131-30964465 25 8.7
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 58.4 bits (135), Expect = 8e-10
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSIKSG 169
QVI++NHPGQI NGY PV H+ H + K+DRR+GK E PK +K+G
Sbjct: 331 QVIIMNHPGQIGNGYAPVLDC-HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNG 385
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 58.4 bits (135), Expect = 8e-10
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSIKSG 169
QVI++NHPGQI NGY PV H+ H + K+DRR+GK E PK +K+G
Sbjct: 331 QVIIMNHPGQIGNGYAPVLDC-HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNG 385
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 58.4 bits (135), Expect = 8e-10
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSIKSG 169
QVI++NHPGQI NGY PV H+ H + K+DRR+GK E PK +K+G
Sbjct: 331 QVIIMNHPGQIGNGYAPVLDC-HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNG 385
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 58.4 bits (135), Expect = 8e-10
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSIKSG 169
QVI++NHPGQI NGY PV H+ H + K+DRR+GK E PK +K+G
Sbjct: 331 QVIIMNHPGQIGNGYAPVLDC-HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNG 385
>01_07_0227 +
42144437-42144446,42145059-42145428,42145528-42145649,
42145767-42145935,42146236-42146545,42146742-42146825,
42147012-42147083,42147780-42147821,42147931-42148020,
42148106-42148213,42148292-42148384,42148540-42148619,
42148701-42148953,42151222-42151236
Length = 605
Score = 28.7 bits (61), Expect = 0.70
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 8 IVLNHPGQISNGYTPVFGLPHSPHSLQICP 97
++ +HPGQ N P G+P +P L P
Sbjct: 452 VLTDHPGQAGNEACPFHGIPANPKPLLAVP 481
>03_06_0697 + 35607040-35607417
Length = 125
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 140 LLIYQYDGRLSSLISGKFAGYVGCVA 63
+L+++YD ++++ AGY GC A
Sbjct: 57 VLVFKYDSSAHNVVAVNAAGYKGCTA 82
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 165 DLMDLGLSSVDLPVRRSTF 109
DLM G+S V+LPVRR+ F
Sbjct: 583 DLMYSGISMVNLPVRRNHF 601
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -1
Query: 117 STFFFDFGQICRLCGLCGNP-NTGVYP 40
+T G C+LC C NP N YP
Sbjct: 30 TTIVLKDGTTCKLCASCDNPCNPSYYP 56
>08_02_0623 - 19429029-19430207
Length = 392
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 24 QVKYQTDTHLYLDCHTAHIACKFARNQRRKSTV 122
+++ D +L DC T H A + R ++ ++TV
Sbjct: 132 EIETVEDVYLMNDCVTIHCAVEVVREKKARATV 164
>06_01_0484 +
3439365-3439474,3439574-3439699,3439700-3439851,
3440129-3440238,3440872-3440957,3441463-3441573,
3441679-3441799
Length = 271
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPK 100
+ V + G+I NG P FG+P + L PK
Sbjct: 92 EATVESEQGKILNGLVPYFGVPVHANLLLYSPK 124
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 137 LIYQYDGRLSSLISGKFAGYVGCVAIQIQVCIR 39
L Y+Y RL + K+ Y + I + +C+R
Sbjct: 390 LWYEYIYRLDKITYNKYHPYTSWIPITVYICLR 422
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 14 LNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSI 160
L+ P +ISNG TPVF H Q D + + +E + S+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSV 319
>02_02_0311 - 8853425-8853633,8853912-8854083
Length = 126
Score = 25.8 bits (54), Expect = 5.0
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -2
Query: 137 LIYQYDGRLSSLISGKFAGYVGC 69
L+++YD ++ +++ AGY GC
Sbjct: 57 LVFKYDAKIHNVVEVDRAGYGGC 79
>07_01_0919 - 7742718-7742824,7743024-7743219
Length = 100
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 14 LNHPGQISNGYTPVF 58
LNHPG I+N YT F
Sbjct: 52 LNHPGDIANKYTRGF 66
>06_03_0543 + 21967787-21970261
Length = 824
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 156 DLGLSSVDLPVRR-STFFFDFGQICRLCGLCGNPNTGVY 43
+L L S+D R S + F Q+C++ GLCG VY
Sbjct: 255 NLRLYSLDKVDRTWSVTWMAFPQLCKVRGLCGQNGICVY 293
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 78 IACKFARNQRRKSTVVLVNQQRTTLNPLN 164
+ACK +N ++ + NQ+R +PLN
Sbjct: 314 VACKAVQNNKKGTKYTKGNQKRQGKSPLN 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,954,253
Number of Sequences: 37544
Number of extensions: 79776
Number of successful extensions: 272
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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