Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N06
(171 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 70 2e-13
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 70 2e-13
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 70 2e-13
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF039042-1|AAP40514.1| 368|Caenorhabditis elegans Serpentine re... 25 5.4
AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear recep... 25 7.2
AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormo... 25 7.2
AC024882-12|AAF60928.2| 347|Caenorhabditis elegans Seven tm rec... 25 7.2
Z83236-2|CAB05778.1| 337|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z81581-3|CAB04665.1| 255|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z69634-10|CAA93457.2| 431|Caenorhabditis elegans Hypothetical p... 25 9.5
Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical pr... 25 9.5
U57624-1|AAB02238.1| 255|Caenorhabditis elegans SPE-12 protein. 25 9.5
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 70.1 bits (164), Expect = 2e-13
Identities = 34/56 (60%), Positives = 40/56 (71%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSIKSG 169
QVI++NHPGQISNGYTPV H+ H + K+KVDRRTGK ED PK +KSG
Sbjct: 309 QVIIMNHPGQISNGYTPVLDC-HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSG 363
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 70.1 bits (164), Expect = 2e-13
Identities = 34/56 (60%), Positives = 40/56 (71%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSIKSG 169
QVI++NHPGQISNGYTPV H+ H + K+KVDRRTGK ED PK +KSG
Sbjct: 343 QVIIMNHPGQISNGYTPVLDC-HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSG 397
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 70.1 bits (164), Expect = 2e-13
Identities = 34/56 (60%), Positives = 40/56 (71%)
Frame = +2
Query: 2 QVIVLNHPGQISNGYTPVFGLPHSPHSLQICPKSKKKVDRRTGKSTEDNPKSIKSG 169
QVI++NHPGQISNGYTPV H+ H + K+KVDRRTGK ED PK +KSG
Sbjct: 343 QVIIMNHPGQISNGYTPVLDC-HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSG 397
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 23 PGQISNGYTPVFGLPHSPHS-LQICPK---SKKKVDRRT 127
P +++ YTP PHS S P+ S++ +DRRT
Sbjct: 2983 PIEMTRSYTPTMADPHSDSSAASTAPRGASSRQSIDRRT 3021
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 23 PGQISNGYTPVFGLPHSPHS-LQICPK---SKKKVDRRT 127
P +++ YTP PHS S P+ S++ +DRRT
Sbjct: 2992 PIEMTRSYTPTMADPHSDSSAASTAPRGASSRQSIDRRT 3030
>AF039042-1|AAP40514.1| 368|Caenorhabditis elegans Serpentine
receptor, class w protein103 protein.
Length = 368
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 77 HSLQICPKSKKKVDRRTGKSTED 145
H+LQ KS + + R+TG + ED
Sbjct: 240 HALQKLKKSGESIGRKTGSTNED 262
>AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear receptor
NHR-115 protein.
Length = 391
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 88 LQAMWAVWQSKYRCVS 41
LQA+W VW ++C S
Sbjct: 206 LQAIWHVWSKIHKCAS 221
>AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 115 protein.
Length = 391
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 88 LQAMWAVWQSKYRCVS 41
LQA+W VW ++C S
Sbjct: 206 LQAIWHVWSKIHKCAS 221
>AC024882-12|AAF60928.2| 347|Caenorhabditis elegans Seven tm
receptor protein 163 protein.
Length = 347
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 168 PDLMDLGLSSVDLPVRRSTFFFDFGQICRLCGLCG 64
P ++ G + + + TF FG+ C L +CG
Sbjct: 67 PYILSAGPGFIVITEIKDTFLGPFGETCFLSSICG 101
>Z83236-2|CAB05778.1| 337|Caenorhabditis elegans Hypothetical
protein K10H10.2 protein.
Length = 337
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 59 GLPHSPHSLQ 88
GLPHSPH +Q
Sbjct: 216 GLPHSPHKIQ 225
>Z81581-3|CAB04665.1| 255|Caenorhabditis elegans Hypothetical
protein T02E1.1 protein.
Length = 255
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 33 YQTDTHLYLDCHTAHIACKF 92
Y T+ + Y +CHT +C F
Sbjct: 63 YATEKYYYTECHTRAPSCGF 82
>Z69634-10|CAA93457.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 7 HCAKSPRSNIKRIHTCIWI 63
HC+K R +K H C WI
Sbjct: 121 HCSKCDRCCMKMDHHCPWI 139
>Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 7 HCAKSPRSNIKRIHTCIWI 63
HC+K R +K H C WI
Sbjct: 121 HCSKCDRCCMKMDHHCPWI 139
>U57624-1|AAB02238.1| 255|Caenorhabditis elegans SPE-12 protein.
Length = 255
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 33 YQTDTHLYLDCHTAHIACKF 92
Y T+ + Y +CHT +C F
Sbjct: 63 YATEKYYYTECHTRAPSCGF 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,360,836
Number of Sequences: 27780
Number of extensions: 73411
Number of successful extensions: 252
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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