Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N04
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 111 1e-25
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 110 2e-25
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 62 8e-11
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 28 1.6
12_02_0251 + 16436846-16438237 26 4.7
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 26 4.7
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 26 4.7
11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496 26 6.3
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 26 6.3
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 25 8.3
05_03_0084 + 8266564-8266699,8267497-8267685,8267772-8267911,826... 25 8.3
04_04_0056 + 22406872-22407258,22408405-22409310 25 8.3
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 111 bits (267), Expect = 1e-25
Identities = 54/98 (55%), Positives = 73/98 (74%)
Frame = +2
Query: 5 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNLVAIIMWAGEAKLAFVIRIRGVNQV 184
SI+ RK IF RA+QY +EY +E++ ++L R+AR + + E KL FV+RIRG+N +
Sbjct: 39 SIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYV-SPEEKLLFVVRIRGINAM 97
Query: 185 SPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPY 298
PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY
Sbjct: 98 HPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPY 135
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 110 bits (265), Expect = 2e-25
Identities = 53/98 (54%), Positives = 74/98 (75%)
Frame = +2
Query: 5 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNLVAIIMWAGEAKLAFVIRIRGVNQV 184
+++ RK IF RA+QY +EY +E++ ++L R+AR + + EAKL FV+RIRG+N +
Sbjct: 40 AVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYV-SPEAKLLFVVRIRGINAM 98
Query: 185 SPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPY 298
PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY
Sbjct: 99 HPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPY 136
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 62.1 bits (144), Expect = 8e-11
Identities = 32/93 (34%), Positives = 51/93 (54%)
Frame = +2
Query: 20 KEIFKRAEQYVKEYRIKERDEIRLARQARNLVAIIMWAGEAKLAFVIRIRGVNQVSPKVR 199
K KR E +V+E+R KE D +R+ + + +KL F IRI G + P +R
Sbjct: 46 KGAIKRPEDFVREFRNKELDFVRMKTRLKVRKLPPAETLNSKLVFAIRIPGTMDLHPHMR 105
Query: 200 KVLQLFRLRQINNGVFVRLNKATVNMLRIAEPY 298
++L+ RL Q+ GVF++ AT+ L + EP+
Sbjct: 106 RILRKLRLTQVLTGVFLKATDATMKRLLVVEPF 138
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 93 QDRLVTSWQLLCGPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRP 266
++ ++ S+ LL G + L+ +SS+F++ + Y + R GC S C ++P
Sbjct: 352 REDVMVSYVLLAGAITLD--ISSIFMLISSYWLQLHRRGGLFGCSFSLAKCVHAGSKP 407
>12_02_0251 + 16436846-16438237
Length = 463
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +2
Query: 119 IIMWAGEAKLAFVIRIRG----VNQVSPKVRKVLQLF-RLRQINNGVFV 250
+ +W+GEA A V+R+RG +++ + VR + + F R NGVF+
Sbjct: 400 VFVWSGEASGAVVLRLRGTLCLLDRRTMAVRALGEDFSEFRDGPNGVFL 448
>02_02_0574 -
11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 153 LSSVFVVSTKYHPRYARYCSC 215
LS+ F+ + + PRY RY SC
Sbjct: 729 LSTEFISNIRCSPRYLRYLSC 749
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 75 VMKSDWQDRLVTSWQLLCGPVKLN*HLSSVFVVSTK 182
V+ W+DR W+ L P+K N + +V+T+
Sbjct: 522 VLDDMWEDRDRKGWENLLAPLKCNEATGCMILVTTR 557
>11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496
Length = 589
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/55 (21%), Positives = 28/55 (50%)
Frame = +2
Query: 20 KEIFKRAEQYVKEYRIKERDEIRLARQARNLVAIIMWAGEAKLAFVIRIRGVNQV 184
+++ + +Q +E ++ +D + L+R ++ V+ W G L +G+N V
Sbjct: 58 EQLGAKQQQQQQERKLSRQDRVELSRSFQHAVSSHDWDGAEALVRRADAQGLNDV 112
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 12 RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTSWQLLCGPVK 140
++G+KSL + S TA + KSD +D+ + LC +K
Sbjct: 6 KKGRKSLPKAMKPSNTTAKHNRSKSDLEDK--NAKDALCSSLK 46
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 32 KRAEQYVKEYRIKERDEIRLARQARNLVAIIMWAGE 139
K + + E +KE I LA + RN+V + W+ E
Sbjct: 205 KSGQAFAVENYVKEFATISLAIRHRNIVPFLGWSSE 240
>05_03_0084 +
8266564-8266699,8267497-8267685,8267772-8267911,
8268130-8268225,8268327-8268388,8268559-8268634,
8268709-8268785,8268866-8268899,8268983-8269132,
8269222-8269356,8269450-8269533
Length = 392
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 96 LANLISSRSLMRYSL-TYCSALLKISFLFL 10
LAN I+ SL+ YSL Y +L+ S +FL
Sbjct: 279 LANYIAELSLLEYSLICYVPSLIAASSIFL 308
>04_04_0056 + 22406872-22407258,22408405-22409310
Length = 430
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 83 IRLARQARNLVAIIMWAGEAKLAFVIRIRGV 175
+RLA+++ A+ WAGE + A +RG+
Sbjct: 85 LRLAKRSAT-AALERWAGEGRAASAAELRGI 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,500,953
Number of Sequences: 37544
Number of extensions: 130720
Number of successful extensions: 410
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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