Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N04
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   111   7e-26
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    29   0.82 
AL032658-1|CAA21743.2|  782|Caenorhabditis elegans Hypothetical ...    28   1.1  
Z81034-5|CAB02730.1|  198|Caenorhabditis elegans Hypothetical pr...    27   1.9  
Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical pr...    27   1.9  
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    27   1.9  
Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical p...    27   3.3  
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    27   3.3  
AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.      26   4.4  
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn...    26   4.4  
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ...    26   5.8  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    26   5.8  
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    26   5.8  
Z71180-2|CAA94890.1|  207|Caenorhabditis elegans Hypothetical pr...    25   7.6  
L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical pr...    25   7.6  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  111 bits (268), Expect = 7e-26
 Identities = 55/96 (57%), Positives = 74/96 (77%)
 Frame = +2

Query: 11  KKRKEIFKRAEQYVKEYRIKERDEIRLARQARNLVAIIMWAGEAKLAFVIRIRGVNQVSP 190
           +K+ + FKRAE+YV+EYR  +++ +RL R+A       + A E K+AFV+RIRG+NQ+ P
Sbjct: 41  EKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPA-EHKVAFVVRIRGINQLHP 99

Query: 191 KVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPY 298
           K RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY
Sbjct: 100 KPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPY 135


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
 Frame = +2

Query: 2   ASIKKRKEIFKRAEQYVKEYRIKERDEIR-LARQARNLV--AIIMWAGEAK-LAFVIRIR 169
           +SI+++ E  ++ +Q  KEYR+K   E+  + +    L+   +I+ AG A+  AF ++++
Sbjct: 65  SSIEQKTEGSEKKQQLAKEYRVKVEQELNDICQDVLKLLDEFLIVKAGAAESKAFYLKMK 124

Query: 170 G 172
           G
Sbjct: 125 G 125


>AL032658-1|CAA21743.2|  782|Caenorhabditis elegans Hypothetical
           protein Y76A2B.2 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -1

Query: 216 NSCNTLRTLGDTWLTPRIR---MTNASLASPAHIIIATRLRACLANLISSRSLMRYSLTY 46
           N  +TLR  G+   T R     ++++  + P++ I+A     CL N  S+ S +  S  +
Sbjct: 449 NQISTLRITGNDITTSRPSPSFLSSSPQSHPSNFILANNTFDCLPNDCSTNSFLLNSPKH 508

Query: 45  CSALLKIS 22
              L KIS
Sbjct: 509 SPLLYKIS 516


>Z81034-5|CAB02730.1|  198|Caenorhabditis elegans Hypothetical
           protein C15C6.4 protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +3

Query: 42  NNMSKNTASRSVMKSDWQDRLVTSWQLLCGPVKLN*HLSSVFVVSTKY 185
           N+ S     ++++KSD+   L+T W L   P ++   +S + V+ T++
Sbjct: 82  NHFSSTKIEKTILKSDYHGALLTIW-LAENPTQIG--ISGIVVLETRH 126


>Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical
           protein F52D10.3b protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +2

Query: 2   ASIKKRKEIFKRAEQYVKEYRIKERDEIR-LARQARNLV--AIIMWAGEAK-LAFVIRIR 169
           +SI+++ E  ++ +Q  KEYR K   E+R + +   NL+   +I  AG A+   F ++++
Sbjct: 65  SSIEQKTEGSEKKQQMAKEYREKVEKELRDICQDVLNLLDKFLIPKAGAAESKVFYLKMK 124

Query: 170 G 172
           G
Sbjct: 125 G 125


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +2

Query: 2   ASIKKRKEIFKRAEQYVKEYRIKERDEIR-LARQARNLV--AIIMWAGEAK-LAFVIRIR 169
           +SI+++ E  ++ +Q  KEYR K   E+R + +   NL+   +I  AG A+   F ++++
Sbjct: 65  SSIEQKTEGSEKKQQMAKEYREKVEKELRDICQDVLNLLDKFLIPKAGAAESKVFYLKMK 124

Query: 170 G 172
           G
Sbjct: 125 G 125


>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +2

Query: 2   ASIKKRKEIFKRAEQYVKEYRIKERDEIR-LARQARNLV--AIIMWAGEAK-LAFVIRIR 169
           +SI+++ E  ++ +Q  KEYR+K   E+  + +    L+   +I+ AG A+   F ++++
Sbjct: 65  SSIEQKTEGSEKKQQLAKEYRVKVEQELNDICQDVLKLLDEFLIVKAGAAESKVFYLKMK 124

Query: 170 G 172
           G
Sbjct: 125 G 125


>Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical
           protein F36G9.1 protein.
          Length = 356

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 85  DFITL-LDAVFFDILFGSLKDFFPLLNGS 2
           DF++L     FF ILFG+  +F  L+NG+
Sbjct: 295 DFLSLGYRLAFFIILFGAFCEFVSLINGT 323


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 24  KSLREPNNMSKNTASRSVMKSD 89
           KS+ +P N+  NTA  ++M SD
Sbjct: 39  KSMIDPQNLDDNTALEAIMNSD 60


>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
          Length = 1007

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 178 VDTTNTDDKC*FSFTGPHNNCHEVTS 101
           +D T+T+D C +SF  P     E  S
Sbjct: 308 IDPTDTNDDCMYSFDKPQKRLQETVS 333


>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
           abnormal protein 2 protein.
          Length = 1007

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 178 VDTTNTDDKC*FSFTGPHNNCHEVTS 101
           +D T+T+D C +SF  P     E  S
Sbjct: 308 IDPTDTNDDCMYSFDKPQKRLQETVS 333


>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1b protein.
          Length = 1021

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 96  LANLISSRSLMRYSLTYCSALLKISFLFLM 7
           L N++++ S+    + YC  + +I+ LFLM
Sbjct: 661 LLNVLAAYSMFNTEVGYCQGMSQIAALFLM 690


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1a protein.
          Length = 1085

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 96  LANLISSRSLMRYSLTYCSALLKISFLFLM 7
           L N++++ S+    + YC  + +I+ LFLM
Sbjct: 661 LLNVLAAYSMFNTEVGYCQGMSQIAALFLM 690


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 168 RIRMTNASLASPAHIIIATRLRACLANLISSRSLMRYSLTYCSALLKISFLFL 10
           R ++ N    S AH+  +TRL   L        ++  S  YC  +  I+FL+L
Sbjct: 46  RGKLRNFRFVSVAHVFYSTRLERML--------VLSISFFYCMRIRNINFLYL 90


>Z71180-2|CAA94890.1|  207|Caenorhabditis elegans Hypothetical
           protein F22E12.2 protein.
          Length = 207

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 2   ASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNLV 115
           A ++ +K   KR+  Y K  +IKER   R   + RNL+
Sbjct: 171 AGLEGKKNREKRSNFYTKSSKIKER-VARFITRTRNLI 207


>L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical
           protein F54F2.5a protein.
          Length = 582

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 5   SIKKRKEIFKRAEQYVKEYRIKERDEI 85
           + +KR+EI+K   Q V+E+R    +EI
Sbjct: 326 NFRKRQEIWKTMGQMVEEHRTDVHEEI 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,459,542
Number of Sequences: 27780
Number of extensions: 115272
Number of successful extensions: 376
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)