Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N03
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   5.3  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    22   9.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    22   9.3  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 165  GNKYLKHVTLNKLMILV 115
            G  Y+KH+TL   ++L+
Sbjct: 1911 GEDYIKHITLRSPLLLI 1927


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 153 LKHVTLNKLMILVLWIIS 100
           +KH+T+  L I  LW+ S
Sbjct: 424 VKHLTVRSLAIEALWLCS 441


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 36   FGFIYVDIXLYFEQKLAL 89
            F ++Y +I L  EQKL+L
Sbjct: 1476 FKYVYKEISLLDEQKLSL 1493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,793
Number of Sequences: 5004
Number of extensions: 9261
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)