Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N03
         (187 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0124 + 6849034-6851502                                           27   2.1  
07_01_0923 - 7761383-7761549,7761849-7762086,7762962-7763028,776...    26   4.9  
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172           25   6.5  
07_02_0019 + 11877119-11879984,11880316-11880389,11881293-118815...    25   8.5  

>05_02_0124 + 6849034-6851502
          Length = 822

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 58  ISTYIKPNDWIYVAILPSC 2
           I T +KPND  Y+A+L +C
Sbjct: 543 ILTGVKPNDVTYIAVLSAC 561


>07_01_0923 -
           7761383-7761549,7761849-7762086,7762962-7763028,
           7763784-7763974
          Length = 220

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 38  WFYIRRYXSLFRTKTGFKRF*DIIHKTKIISLLSVTCFKYLLPD 169
           WF+I  + +  R+    KRF   +H   +I++     ++ LLPD
Sbjct: 108 WFHIN-FWARSRSSNKIKRFFAELHYKPLITISGFVSWEQLLPD 150


>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
          Length = 618

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   GTRVRSRRRSNHLVLYTSIYXSISNKNW 84
           GT++R  R  +H++  + I   IS + W
Sbjct: 192 GTKMRKARSKSHIITQSEILKLISPETW 219


>07_02_0019 +
           11877119-11879984,11880316-11880389,11881293-11881511,
           11881557-11881679,11881759-11881859,11881938-11881990,
           11882084-11882269,11882677-11882894
          Length = 1279

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 64  RXISTYIKPNDWIYVAILPS 5
           R + T +KPND IY+ +L S
Sbjct: 584 RMLDTGLKPNDVIYIDLLES 603


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,730,636
Number of Sequences: 37544
Number of extensions: 46167
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)