Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N03
         (187 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical pr...    27   1.3  
AF016443-2|AAC24272.1|  359|Caenorhabditis elegans Hypothetical ...    26   4.1  

>U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical
           protein W05H9.2 protein.
          Length = 851

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 31  NHLVLYTSIYXSISNKNWL*TILGYYPQN*NHKFVKCHVLQVF 159
           N L+ YT ++      +W+ T++    QN  H F+ C ++ +F
Sbjct: 148 NFLITYTEMF------HWIGTVMETEYQNGIHSFIPCQLIDIF 184


>AF016443-2|AAC24272.1|  359|Caenorhabditis elegans Hypothetical
           protein C17E7.6 protein.
          Length = 359

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 70  K*RXISTYIKPNDWIYVAI 14
           K R I+ YI P DW ++A+
Sbjct: 150 KSRTINKYISPQDWTFLAL 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,487,609
Number of Sequences: 27780
Number of extensions: 46012
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)