Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N02
         (275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   2.6  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   2.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   2.6  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    24   4.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    24   4.6  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    23   6.1  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    23   8.0  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    23   8.0  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    23   8.0  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 141 VSTILEVHKKYNALVLVAFIYDSGFVAALDKACGRFIN 254
           V  +L  HK    +V  +F++D     A+ KA   FIN
Sbjct: 332 VQELLSFHKFLQVVVDESFLHDETLSYAMRKAFETFIN 369


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 105 CGEFAHTDPKVYVSTILEVHKKYNALVLVAFIYDSGFVAALDK 233
           CG   +  P++ V++      +Y ALVL+A       V+ L++
Sbjct: 476 CGVHINAGPEICVASTKAYTSQYVALVLMALYLSRDSVSRLER 518


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 218 DKTGVINESDQNESVVFLMHFQYC*HV 138
           D   V+++ D NE    +M F Y  H+
Sbjct: 310 DSDEVVSDDDSNEQQTMMMKFNYLQHL 336


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 115 SLTLIRRYTCQQYWKCIRNTTLSFWSLSF 201
           S+ LI   TC  +  C R+ +   W + F
Sbjct: 38  SMELIAILTCSNHLICCRSNSQRIWDVDF 66


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 268 VTAFVLMNRPHALSRAATKPES*MKATK 185
           V + V  N PH     A KPE+   ATK
Sbjct: 202 VNSSVTSNPPHTEEPVAAKPEASSTATK 229


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 97  STSAANSLTLIRRYTCQQYWKCIRNTTLS 183
           +T     L  +RR+  Q+ WK   N +LS
Sbjct: 107 NTDRLADLLRVRRFIYQKAWKSYENPSLS 135


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 196 SFMTPVLSPPWIRRVDDSLTRM 261
           SF+  ++S   IR +DD LT +
Sbjct: 317 SFLATMMSQDKIRSIDDKLTEL 338


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 60  LEQHIHAQGLQAIDKCGEFA 119
           + QH H++   AID  G FA
Sbjct: 471 ISQHTHSELEDAIDSLGSFA 490


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 166 RNTTLSFWSLSFMTPVLSPPWIRRVDDSL 252
           +N T+  W+++   P+LS  W  ++D SL
Sbjct: 60  KNGTIECWNVNQEPPILSSLW--QLDSSL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,042,324
Number of Sequences: 5004
Number of extensions: 17496
Number of successful extensions: 53
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)