Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N02
(275 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 91 1e-19
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 91 1e-19
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 60 2e-10
Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical pr... 51 1e-07
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 44 1e-05
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 44 1e-05
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 44 1e-05
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 44 1e-05
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 44 1e-05
U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical pr... 27 1.9
U28929-4|AAA68347.3| 338|Caenorhabditis elegans Hypothetical pr... 27 2.5
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 27 2.5
Z81477-7|CAB03927.2| 326|Caenorhabditis elegans Hypothetical pr... 26 3.3
AL022288-7|CAA18369.1| 326|Caenorhabditis elegans Hypothetical ... 26 3.3
AC006714-10|AAK29727.2| 253|Caenorhabditis elegans F-box a prot... 26 3.3
Z81455-6|CAN86597.1| 695|Caenorhabditis elegans Hypothetical pr... 26 4.4
Z49126-3|CAA88941.2| 374|Caenorhabditis elegans Hypothetical pr... 26 4.4
U51997-2|AAG24069.1| 332|Caenorhabditis elegans Serpentine rece... 26 4.4
AL032637-27|CAN86620.1| 695|Caenorhabditis elegans Hypothetical... 26 4.4
Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical pr... 25 5.8
Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical pr... 25 5.8
U29244-12|AAC71093.3| 604|Caenorhabditis elegans Hypothetical p... 25 5.8
U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical pr... 25 7.7
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 90.6 bits (215), Expect = 1e-19
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +3
Query: 9 YSLVARIPDGLCELRRLLEQHIHAQGLQAIDKCGEFAHTDPKVYVSTILEVHKKYNALVL 188
+ L R+P+GL ELR+ LE HI +G QA+++ A TD K+YV T+LEVH++Y +LV
Sbjct: 324 FKLCDRVPNGLDELRKSLENHIAKEGHQALERVAMEAATDAKLYVKTLLEVHERYQSLVN 383
Query: 189 VAFIYDSGFVAALDKACGRFINTNAVTK 272
+F + GF+ +LDKA FIN NAVTK
Sbjct: 384 RSFKNEPGFMQSLDKAATSFINNNAVTK 411
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 90.6 bits (215), Expect = 1e-19
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +3
Query: 9 YSLVARIPDGLCELRRLLEQHIHAQGLQAIDKCGEFAHTDPKVYVSTILEVHKKYNALVL 188
+ L R+P+GL ELR+ LE HI +G QA+++ A TD K+YV T+LEVH++Y +LV
Sbjct: 324 FKLCDRVPNGLDELRKSLENHIAKEGHQALERVAMEAATDAKLYVKTLLEVHERYQSLVN 383
Query: 189 VAFIYDSGFVAALDKACGRFINTNAVTK 272
+F + GF+ +LDKA FIN NAVTK
Sbjct: 384 RSFKNEPGFMQSLDKAATSFINNNAVTK 411
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical
protein K08E7.7 protein.
Length = 729
Score = 60.1 bits (139), Expect = 2e-10
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +3
Query: 9 YSLVARIPDGLCELRRLLEQHIHAQGLQAIDKCGEFA--HTDPKVYVSTILEVHKKYNAL 182
YSL R+ GL +LR LE+ I +G + + + + + T PK Y++ +LEVH+ Y L
Sbjct: 278 YSLCRRVTHGLEDLRVYLEKRILKEGHETLQRLAKDSGLKTTPKEYITKLLEVHEIYFNL 337
Query: 183 VLVAFIYDSGFVAALDKACGRFINTNAVT 269
+ AF ++ F+ +LDKA FI NAVT
Sbjct: 338 INKAFDRNALFMQSLDKASKDFIEANAVT 366
>Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical
protein ZK856.1 protein.
Length = 765
Score = 50.8 bits (116), Expect = 1e-07
Identities = 26/88 (29%), Positives = 46/88 (52%)
Frame = +3
Query: 9 YSLVARIPDGLCELRRLLEQHIHAQGLQAIDKCGEFAHTDPKVYVSTILEVHKKYNALVL 188
Y L+ R G+ + + ++ HI +GL + E TDP+ YV +L + K+++LV
Sbjct: 280 YRLIRRTRSGIDTVLKCIDTHIRTEGLNDMRNNAENLSTDPERYVQQLLLMFDKFSSLVR 339
Query: 189 VAFIYDSGFVAALDKACGRFINTNAVTK 272
F D+ + A DKA +N +++ K
Sbjct: 340 EGFCDDARLLTARDKAFRAVVNDSSIFK 367
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +3
Query: 9 YSLVARIPDGLCELRRLLEQHIHAQGLQAIDKCGEFAHTDPKVYVSTILEVHKKYNALVL 188
Y L+ I GL + + E+++ +GL+A+ + P+ +V +L V+ K+N +
Sbjct: 314 YRLLKPIQAGLSVMVKEFEEYVKKKGLEAVSRLT--GENVPQQFVENVLRVYNKFNDMKT 371
Query: 189 VAFIYDSGFVAALDKACGRFINT 257
F+ D F + LDKA +N+
Sbjct: 372 AVFMDDGEFSSGLDKALQGVVNS 394
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +3
Query: 9 YSLVARIPDGLCELRRLLEQHIHAQGLQAIDKCGEFAHTDPKVYVSTILEVHKKYNALVL 188
Y L+ I GL + + E+++ +GL+A+ + P+ +V +L V+ K+N +
Sbjct: 331 YRLLKPIQAGLSVMVKEFEEYVKKKGLEAVSRLT--GENVPQQFVENVLRVYNKFNDMKT 388
Query: 189 VAFIYDSGFVAALDKACGRFINT 257
F+ D F + LDKA +N+
Sbjct: 389 AVFMDDGEFSSGLDKALQGVVNS 411
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +3
Query: 9 YSLVARIPDGLCELRRLLEQHIHAQGLQAIDKCGEFAHTDPKVYVSTILEVHKKYNALVL 188
Y L+ I GL + + E+++ +GL+A+ + P+ +V +L V+ K+N +
Sbjct: 314 YRLLKPIQAGLSVMVKEFEEYVKKKGLEAVSRLT--GENVPQQFVENVLRVYNKFNDMKT 371
Query: 189 VAFIYDSGFVAALDKACGRFINT 257
F+ D F + LDKA +N+
Sbjct: 372 AVFMDDGEFSSGLDKALQGVVNS 394
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +3
Query: 9 YSLVARIPDGLCELRRLLEQHIHAQGLQAIDKCGEFAHTDPKVYVSTILEVHKKYNALVL 188
Y L+ I GL + + E+++ +GL+A+ + P+ +V +L V+ K+N +
Sbjct: 390 YRLLKPIQAGLSVMVKEFEEYVKKKGLEAVSRLT--GENVPQQFVENVLRVYNKFNDMKT 447
Query: 189 VAFIYDSGFVAALDKACGRFINT 257
F+ D F + LDKA +N+
Sbjct: 448 AVFMDDGEFSSGLDKALQGVVNS 470
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +3
Query: 9 YSLVARIPDGLCELRRLLEQHIHAQGLQAIDKCGEFAHTDPKVYVSTILEVHKKYNALVL 188
Y L+ I GL + + E+++ +GL+A+ + P+ +V +L V+ K+N +
Sbjct: 314 YRLLKPIQAGLSVMVKEFEEYVKKKGLEAVSRLT--GENVPQQFVENVLRVYNKFNDMKT 371
Query: 189 VAFIYDSGFVAALDKACGRFINT 257
F+ D F + LDKA +N+
Sbjct: 372 AVFMDDGEFSSGLDKALQGVVNS 394
>U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical
protein C09F5.3 protein.
Length = 359
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 33 DGLCELRRLLEQHIHAQGLQAIDKCGEFAHTDPKVYVSTILEVHKKYN 176
D +L L QH+ Q Q I + A P+ E HKKY+
Sbjct: 163 DKKSQLEHLTTQHLQIQVTQHICSICDSAFPSPQAQSVHFAEAHKKYS 210
>U28929-4|AAA68347.3| 338|Caenorhabditis elegans Hypothetical
protein F09C12.6 protein.
Length = 338
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -2
Query: 262 AFVLMNRPHALSRAATKPES*MKATKTRALYFLCTSSIVDTYTFGSV*ANSPH 104
+FVL++ P+A+S + E + + YF C +S ++ + + S+ A H
Sbjct: 244 SFVLVSIPNAISILSVHFEEVVSFISKPSTYFTCVNSGINIFVYLSLNAEFRH 296
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/38 (28%), Positives = 14/38 (36%)
Frame = +1
Query: 37 GCASCAGCWSSTYTRRGCRRSTSAANSLTLIRRYTCQQ 150
GC +C TY GC + T L+ C Q
Sbjct: 481 GCVACTCNLLGTYNNEGCDKYTGMCTCKRLVTGENCDQ 518
>Z81477-7|CAB03927.2| 326|Caenorhabditis elegans Hypothetical
protein C27C7.4 protein.
Length = 326
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 37 GCASCAGCWSSTYTRRGCRRSTSAANSLTLIR--RYTCQ--QYWKCIR 168
G SCA C + G R +A NS T+ ++ C+ +Y CIR
Sbjct: 29 GITSCAACAAFFRRSDGIRYMCTATNSCTISHDMKFFCRACRYTSCIR 76
>AL022288-7|CAA18369.1| 326|Caenorhabditis elegans Hypothetical
protein ZK1025.10 protein.
Length = 326
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 37 GCASCAGCWSSTYTRRGCRRSTSAANSLTLIR--RYTCQ--QYWKCIR 168
G SCA C + G R +A NS T+ ++ C+ +Y CIR
Sbjct: 29 GITSCAACAAFFRRSDGIRYMCTATNSCTISHDMKFFCRACRYTSCIR 76
>AC006714-10|AAK29727.2| 253|Caenorhabditis elegans F-box a protein
protein 21 protein.
Length = 253
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 157 KCIRNTTLSFWSLSF 201
KC+ T L+FWS SF
Sbjct: 85 KCVHATELTFWSFSF 99
>Z81455-6|CAN86597.1| 695|Caenorhabditis elegans Hypothetical
protein B0399.1f protein.
Length = 695
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 219 RQNRSHK*KRPKRERCISYALPVLLTRIPSDQCE 118
R R K K P +ERC S ++P L R CE
Sbjct: 12 RSFRLRKKKVPIQERCRSTSIPAPLDRRQGRSCE 45
>Z49126-3|CAA88941.2| 374|Caenorhabditis elegans Hypothetical
protein DH11.4 protein.
Length = 374
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 240 HTPYPGRRQNRSHK*KRP 187
H P PG R NR H+ RP
Sbjct: 104 HQPAPGARANRVHRDPRP 121
>U51997-2|AAG24069.1| 332|Caenorhabditis elegans Serpentine
receptor, class h protein19 protein.
Length = 332
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 130 RRYTCQQYWKCIRNTTLSFWSLSFMTPVLSPPWI 231
R+Y W I N L + + F+ P + P+I
Sbjct: 42 RKYQLFLIWNVIENFALDVYLIFFLVPAVHSPYI 75
>AL032637-27|CAN86620.1| 695|Caenorhabditis elegans Hypothetical
protein B0399.1f protein.
Length = 695
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 219 RQNRSHK*KRPKRERCISYALPVLLTRIPSDQCE 118
R R K K P +ERC S ++P L R CE
Sbjct: 12 RSFRLRKKKVPIQERCRSTSIPAPLDRRQGRSCE 45
>Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical
protein ZC506.4b protein.
Length = 954
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 19 WLVYRTGCASCAGCWSSTYTRRGC 90
+L+ T C C W T R+GC
Sbjct: 596 YLINETHCVGCEQGWWPTKDRKGC 619
>Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical
protein ZC506.4a protein.
Length = 999
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 19 WLVYRTGCASCAGCWSSTYTRRGC 90
+L+ T C C W T R+GC
Sbjct: 641 YLINETHCVGCEQGWWPTKDRKGC 664
>U29244-12|AAC71093.3| 604|Caenorhabditis elegans Hypothetical
protein ZK1248.13 protein.
Length = 604
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +3
Query: 9 YSLVARIPDGLCELRRLLEQHIHAQGLQAIDKCGEFAHT 125
+S ++ + C+L +L I + + +++C +FAH+
Sbjct: 378 FSWISTKSEFTCKLEHMLASFIRPEVIDVMNQCMKFAHS 416
>U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical
protein F45E1.5 protein.
Length = 540
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 18 VARIPDGLCELRRLLEQHIHAQGLQAID 101
+ +P+ E +++ QH+ GLQ ID
Sbjct: 337 IVELPECSMEFIQIINQHLMPHGLQVID 364
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,853,339
Number of Sequences: 27780
Number of extensions: 100585
Number of successful extensions: 360
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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