Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M24
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   1.2  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    24   4.9  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    23   6.5  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    23   8.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    23   8.5  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    23   8.5  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 107 CRSEGVELARDLDYKAAASWIGHP-YFD 187
           C  EG+++         A W+GHP YFD
Sbjct: 775 CIYEGIQIDAAFASFFVAKWLGHPSYFD 802


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 134 WPIRHLLSGRHDPQWSRNLQR 72
           W +RHLL  + D + S  L+R
Sbjct: 197 WKLRHLLRKKRDKEKSLELER 217


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 87  TPLRIMPAAQKVSNWPGTWTTKRP 158
           TPL I+ A+     WP  +T   P
Sbjct: 401 TPLAIVKASSGTKGWPKMFTLPNP 424


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 103 MILSGVEIFSAISSRHH 53
           M L GVEIF   S  HH
Sbjct: 188 MALDGVEIFINASGSHH 204


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 86   YSTEDHACRSEGVELARDLDYKAAAS--WIGHPYFDVIDNS 202
            Y   DH+      E A D+DY+  +S     +P +  IDNS
Sbjct: 919  YKNLDHSLTGSNTEDAMDIDYENTSSPNTASNPVWS-IDNS 958


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 83  FYSTEDHACRSEGVELARDLDYKAAASWIG 172
           F +  +H C  + V+   D +YK    ++G
Sbjct: 305 FVNYANHECAQKAVDELNDKEYKGKKLYVG 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,571
Number of Sequences: 5004
Number of extensions: 16700
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)