Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M24
(284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658... 29 0.44
07_03_1276 - 25387539-25388317,25388639-25388888 27 3.1
05_05_0330 + 24137188-24137619 26 4.1
02_05_0298 + 27671473-27672147 26 4.1
07_03_0902 - 22435692-22436156,22436684-22436923,22437228-224373... 26 5.4
07_03_0777 + 21450236-21450286,21450432-21450830,21450968-214511... 25 7.1
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 25 7.1
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 25 7.1
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 25 9.4
05_06_0182 + 26179720-26179959,26180193-26180260,26180680-261807... 25 9.4
02_02_0005 - 6016429-6017955 25 9.4
02_02_0001 - 5977498-5979003 25 9.4
>11_01_0787 +
6578158-6579287,6579439-6580870,6581087-6581097,
6581525-6582125,6583981-6585054,6585745-6585873,
6585925-6585963
Length = 1471
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 83 FYSTEDHACRSEGVELARDL 142
FYST+DH C SE VE+A +
Sbjct: 340 FYSTKDHECPSELVEVAASI 359
>07_03_1276 - 25387539-25388317,25388639-25388888
Length = 342
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 8 DNVELRDNRYNHIVHMVSAANGAEDFYSTEDHACRSEGVELARDLDYK 151
D +DN ++H +H V AA A++F +D + G +L + Y+
Sbjct: 267 DGSRCKDNAFDHQIHKVEAA-VADEFAFYDDPSYMQLGYQLDQGNSYE 313
>05_05_0330 + 24137188-24137619
Length = 143
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 155 PLCSPSPWPIRHLLS 111
PLC+ +PWP H L+
Sbjct: 84 PLCARTPWPSSHFLA 98
>02_05_0298 + 27671473-27672147
Length = 224
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 59 SAANGAEDFYSTEDHA-CRSEGVELARDLDYKAAASWIGHPYFDVIDNSSD 208
+AA AE F D + +E A A + HPY++V+D+ D
Sbjct: 132 AAAEAAEAFRPPPDESNAATEVAAAASGATNSNAEQFASHPYYEVMDDGLD 182
>07_03_0902 -
22435692-22436156,22436684-22436923,22437228-22437349,
22437441-22437587,22437753-22437882,22437981-22438116,
22438223-22438428,22438644-22438844,22438999-22439157,
22439781-22439858,22440453-22440542,22440625-22440777,
22440873-22440991,22441190-22441328,22441422-22441525,
22441944-22441989,22442087-22442252,22442356-22442383,
22442460-22442610,22442686-22442829,22442912-22443013,
22443566-22444093
Length = 1217
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 152 AAASWIGHPYFDVIDNSSDFDKKMNGLIACVCQKIG 259
AA W+G+ F VIDN + + N +A + +G
Sbjct: 444 AAVLWLGNISFSVIDNENHVEIVSNEGLATAAKLLG 479
>07_03_0777 +
21450236-21450286,21450432-21450830,21450968-21451132,
21451527-21451790,21451963-21452172,21452300-21452539,
21452640-21452777
Length = 488
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +2
Query: 137 DLDYKAAASWIGHPYFDVIDNSSDFD 214
+ D+KA A+ GHP +++ D++ +++
Sbjct: 212 EADFKAEAAKAGHPEWELPDDAGEYN 237
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 175 MTDPRRGRFVVQVPGQFDTF*AAGMILSGVEIFSAISS 62
+TDP R F+ + G FD A G L G+ F + S
Sbjct: 718 LTDPSRSMFIEAMMGWFD---AGGNELLGMRFFHLLES 752
>02_05_0061 +
25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 53 MVSAANGAEDFYSTEDHACRSEGVELAR 136
MVS +GA +++ +H CR GV R
Sbjct: 46 MVSDPSGALTWWNASNHPCRWRGVACGR 73
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 99 IMPAAQKVSNWPGTWTTKRPRRGSV 173
+ P S WPGT K+P+ GS+
Sbjct: 209 LRPVFANPSIWPGTTIHKQPKYGSL 233
>05_06_0182 +
26179720-26179959,26180193-26180260,26180680-26180719,
26181304-26181399,26181592-26181606
Length = 152
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 226 RADRLRLPEDRHRHR 270
RA+RL LP+D+HR +
Sbjct: 66 RAERLLLPQDQHRRQ 80
>02_02_0005 - 6016429-6017955
Length = 508
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 69 MALKISTPLRIMPAAQK--VSNWPGTWTTKRPRRGSV 173
+A + LR +PA +S+W +WT RR V
Sbjct: 114 LAAPLEAYLRALPAPPSCIISDWSNSWTAGVARRAGV 150
>02_02_0001 - 5977498-5979003
Length = 501
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 69 MALKISTPLRIMPAAQK--VSNWPGTWTTKRPRRGSV 173
+A + LR +PA +S+W +WT RR V
Sbjct: 117 LAAPLEAYLRALPAPPSCIISDWSNSWTAGVARRAGV 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,889,218
Number of Sequences: 37544
Number of extensions: 124233
Number of successful extensions: 395
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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