Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M24
(284 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97010-6|AAL65797.1| 501|Caenorhabditis elegans Hypothetical pr... 102 5e-23
U97010-5|AAK73903.1| 444|Caenorhabditis elegans Hypothetical pr... 102 5e-23
U97010-4|AAL65798.1| 438|Caenorhabditis elegans Hypothetical pr... 102 5e-23
U50313-2|AAY86230.1| 883|Caenorhabditis elegans Inositol 1,4,5-... 30 0.31
U50313-1|AAY86229.1| 923|Caenorhabditis elegans Inositol 1,4,5-... 30 0.31
U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone... 29 0.71
U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone... 29 0.71
AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear recep... 29 0.71
AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear recep... 29 0.71
AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear recep... 29 0.71
AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear recep... 29 0.71
AY204162-1|AAO39166.1| 112|Caenorhabditis elegans nuclear recep... 29 0.71
U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical pr... 27 2.2
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 27 2.9
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ... 26 3.8
AL132949-21|CAB61098.1| 866|Caenorhabditis elegans Hypothetical... 26 5.0
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport... 26 5.0
Z81132-14|CAB03432.3| 378|Caenorhabditis elegans Hypothetical p... 25 6.6
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical... 25 6.6
U28943-5|AAA68359.2| 435|Caenorhabditis elegans Hypothetical pr... 25 8.7
AC024824-6|AAK85504.2| 567|Caenorhabditis elegans Hypothetical ... 25 8.7
>U97010-6|AAL65797.1| 501|Caenorhabditis elegans Hypothetical
protein W08A12.1a protein.
Length = 501
Score = 102 bits (244), Expect = 5e-23
Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 DNVELRDNRYNHIVHMVSAANGAEDFYSTEDHACRSEGVELARDLDYKAAASWIGHPYFD 187
+ +LR +RY+ I H+V+AA+GAE +Y+ ++A RSEGV A +LD + + WIGHPY D
Sbjct: 221 EEFDLRCSRYDQIAHLVTAADGAEKYYTLANNATRSEGVSHAMELDKRTRSVWIGHPYMD 280
Query: 188 VID--NSSDFDKKMNGLIACVCQKIGIDTGDRLS 283
+ID N+S FD K+N LI VC + GI +GDRL+
Sbjct: 281 IIDNKNTSTFDDKVNKLIQVVCDRTGIRSGDRLA 314
>U97010-5|AAK73903.1| 444|Caenorhabditis elegans Hypothetical
protein W08A12.1b protein.
Length = 444
Score = 102 bits (244), Expect = 5e-23
Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 DNVELRDNRYNHIVHMVSAANGAEDFYSTEDHACRSEGVELARDLDYKAAASWIGHPYFD 187
+ +LR +RY+ I H+V+AA+GAE +Y+ ++A RSEGV A +LD + + WIGHPY D
Sbjct: 164 EEFDLRCSRYDQIAHLVTAADGAEKYYTLANNATRSEGVSHAMELDKRTRSVWIGHPYMD 223
Query: 188 VID--NSSDFDKKMNGLIACVCQKIGIDTGDRLS 283
+ID N+S FD K+N LI VC + GI +GDRL+
Sbjct: 224 IIDNKNTSTFDDKVNKLIQVVCDRTGIRSGDRLA 257
>U97010-4|AAL65798.1| 438|Caenorhabditis elegans Hypothetical
protein W08A12.1c protein.
Length = 438
Score = 102 bits (244), Expect = 5e-23
Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 DNVELRDNRYNHIVHMVSAANGAEDFYSTEDHACRSEGVELARDLDYKAAASWIGHPYFD 187
+ +LR +RY+ I H+V+AA+GAE +Y+ ++A RSEGV A +LD + + WIGHPY D
Sbjct: 158 EEFDLRCSRYDQIAHLVTAADGAEKYYTLANNATRSEGVSHAMELDKRTRSVWIGHPYMD 217
Query: 188 VID--NSSDFDKKMNGLIACVCQKIGIDTGDRLS 283
+ID N+S FD K+N LI VC + GI +GDRL+
Sbjct: 218 IIDNKNTSTFDDKVNKLIQVVCDRTGIRSGDRLA 251
>U50313-2|AAY86230.1| 883|Caenorhabditis elegans Inositol
1,4,5-trisphosphate receptorinteracting protein protein
1, isoform b protein.
Length = 883
Score = 29.9 bits (64), Expect = 0.31
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 149 KAAASWIGHPYFDVIDNSSDFDKKMNGLIACVCQKIGIDTG 271
+AA + + HP DN+ DK++N VC+ G++TG
Sbjct: 613 EAAEATLAHP--SSFDNTITADKEVNAFSQYVCRVTGVETG 651
>U50313-1|AAY86229.1| 923|Caenorhabditis elegans Inositol
1,4,5-trisphosphate receptorinteracting protein protein
1, isoform a protein.
Length = 923
Score = 29.9 bits (64), Expect = 0.31
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 149 KAAASWIGHPYFDVIDNSSDFDKKMNGLIACVCQKIGIDTG 271
+AA + + HP DN+ DK++N VC+ G++TG
Sbjct: 613 EAAEATLAHP--SSFDNTITADKEVNAFSQYVCRVTGVETG 651
>U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform c protein.
Length = 440
Score = 28.7 bits (61), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 212 DKKMNGLIACVCQKIGIDTG 271
+K + GL C+ QKIGI TG
Sbjct: 373 NKYLGGLFTCITQKIGIPTG 392
>U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform a protein.
Length = 445
Score = 28.7 bits (61), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 212 DKKMNGLIACVCQKIGIDTG 271
+K + GL C+ QKIGI TG
Sbjct: 378 NKYLGGLFTCITQKIGIPTG 397
>AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 436
Score = 28.7 bits (61), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 212 DKKMNGLIACVCQKIGIDTG 271
+K + GL C+ QKIGI TG
Sbjct: 369 NKYLGGLFTCITQKIGIPTG 388
>AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 445
Score = 28.7 bits (61), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 212 DKKMNGLIACVCQKIGIDTG 271
+K + GL C+ QKIGI TG
Sbjct: 378 NKYLGGLFTCITQKIGIPTG 397
>AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 28.7 bits (61), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 212 DKKMNGLIACVCQKIGIDTG 271
+K + GL C+ QKIGI TG
Sbjct: 373 NKYLGGLFTCITQKIGIPTG 392
>AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 28.7 bits (61), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 212 DKKMNGLIACVCQKIGIDTG 271
+K + GL C+ QKIGI TG
Sbjct: 373 NKYLGGLFTCITQKIGIPTG 392
>AY204162-1|AAO39166.1| 112|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 112
Score = 28.7 bits (61), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 212 DKKMNGLIACVCQKIGIDTG 271
+K + GL C+ QKIGI TG
Sbjct: 45 NKYLGGLFTCITQKIGIPTG 64
>U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical
protein F07C4.6 protein.
Length = 204
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 59 SAANGAEDFYSTEDHACRSEGVELARDLDYKAAASWIGHP 178
+A NG YS AC + + + Y +A SW+G+P
Sbjct: 27 TAYNGTSFVYSASAVACSNVLSDQYCQVAYPSANSWLGYP 66
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 140 SPWPIRHLLSGRHDPQWSRN 81
SP ++ LLSG P+WSR+
Sbjct: 2633 SPEEVQRLLSGEQCPEWSRD 2652
>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
protein Y46G5A.6 protein.
Length = 1002
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 217 EDERADRLRLPEDRHRHRRPS 279
ED R DRLR PEDR R PS
Sbjct: 652 EDCR-DRLRSPEDRTERRSPS 671
>AL132949-21|CAB61098.1| 866|Caenorhabditis elegans Hypothetical
protein Y53F4B.24 protein.
Length = 866
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 9 ITWNCVITDIITSCIWCRLLMALKISTPL 95
ITWN + D++ SC++ + +TP+
Sbjct: 452 ITWNLFVPDVLASCMFQTDYITELFNTPI 480
>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
family protein 2 protein.
Length = 1551
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 146 YKAAASWIGHPYFDVIDNSSDFDKKMNGLIACV 244
YK ++ +FD I NS FD + L V
Sbjct: 302 YKNRVEFVDDEHFDTIPNSDSFDSEPTNLTLAV 334
>Z81132-14|CAB03432.3| 378|Caenorhabditis elegans Hypothetical
protein T26E4.3 protein.
Length = 378
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 9 ITWNCVITDIITSCIWCRLLMALKISTPLRIMPAAQKV 122
+ W CV+ II C +L+ LKIS R QK+
Sbjct: 9 LIWFCVVFGII-----CNILVVLKISRDARNFKCFQKI 41
>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
protein C02E7.1 protein.
Length = 1050
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 154 RFVVQVPGQFDTF*AAGMILSGVEIFSAISSRHHMHDVIISVITQFHVILV 2
+F V++ G+F F I+ V IFS + HDVI +T F ++++
Sbjct: 284 KFQVEI-GRFVKFITVMAIIMAVIIFSVGLGINKGHDVIRYFVTGFLMVII 333
>U28943-5|AAA68359.2| 435|Caenorhabditis elegans Hypothetical
protein E04F6.6 protein.
Length = 435
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 247 PEDRHRHRRPS 279
P RHRHRRPS
Sbjct: 59 PRRRHRHRRPS 69
>AC024824-6|AAK85504.2| 567|Caenorhabditis elegans Hypothetical
protein Y55B1BR.4 protein.
Length = 567
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +2
Query: 110 RSEGVELARDLDYKAAASWIGHPYFDV-----IDNSSDFDKKMNGLIACVCQKIGIDT 268
RS + ++ AA+ + DV IDNS+ ++K G + + + +DT
Sbjct: 481 RSHSAASSSNISQNTAATSAARAFSDVEIRQIIDNSAQMEQKYRGYCDAIIRNVDLDT 538
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,610,362
Number of Sequences: 27780
Number of extensions: 96230
Number of successful extensions: 281
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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