Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M23
(394 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 158 2e-40
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 157 6e-40
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 157 8e-40
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 0.79
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 1.0
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 4.2
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 4.2
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 5.5
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 24 7.3
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 24 7.3
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 24 7.3
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 24 7.3
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 24 7.3
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 7.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 7.3
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 24 9.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 158 bits (384), Expect = 2e-40
Identities = 68/93 (73%), Positives = 79/93 (84%)
Frame = +2
Query: 17 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 196
W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKVDGKVR
Sbjct: 18 WLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVR 77
Query: 197 TDPTYPAGFMDVVSIEKANELFRVIYDVKGRFT 295
TD T+P GFMDV+S+EK E FR++YD+KGRFT
Sbjct: 78 TDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFT 110
Score = 49.2 bits (112), Expect = 2e-07
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +3
Query: 297 IRRITPGEAKYKLCEVRRVATGPKSVPYLVTH 392
+ RIT EAKYKLC+V+RV G K VP+LVTH
Sbjct: 111 VHRITAEEAKYKLCKVKRVQLGAKGVPFLVTH 142
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 157 bits (381), Expect = 6e-40
Identities = 67/93 (72%), Positives = 79/93 (84%)
Frame = +2
Query: 17 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 196
W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKVDGKVR
Sbjct: 18 WLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVR 77
Query: 197 TDPTYPAGFMDVVSIEKANELFRVIYDVKGRFT 295
TD T+P GFMDV+S++K E FR++YD+KGRFT
Sbjct: 78 TDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFT 110
Score = 49.2 bits (112), Expect = 2e-07
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +3
Query: 297 IRRITPGEAKYKLCEVRRVATGPKSVPYLVTH 392
+ RIT EAKYKLC+V+RV G K VP+LVTH
Sbjct: 111 VHRITAEEAKYKLCKVKRVQLGAKGVPFLVTH 142
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 157 bits (380), Expect = 8e-40
Identities = 67/93 (72%), Positives = 79/93 (84%)
Frame = +2
Query: 17 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 196
W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLI+VDGKVR
Sbjct: 18 WLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVR 77
Query: 197 TDPTYPAGFMDVVSIEKANELFRVIYDVKGRFT 295
TD T+P GFMDV+S+EK E FR++YD+KGRFT
Sbjct: 78 TDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFT 110
Score = 49.2 bits (112), Expect = 2e-07
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +3
Query: 297 IRRITPGEAKYKLCEVRRVATGPKSVPYLVTH 392
+ RIT EAKYKLC+V+RV G K VP+LVTH
Sbjct: 111 VHRITAEEAKYKLCKVKRVQLGAKGVPFLVTH 142
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.5 bits (58), Expect = 0.79
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -2
Query: 291 NLPFTSYITRNNSFAFSMDTTSINPAGYVGSVR--TFPSTLMRRCFTILSTS 142
+LP ++T +F ++ T+ G + S + T S ++ CFTI+STS
Sbjct: 605 SLPELDFLTSVFNFPLALRNTATRILGIILSTKDSTRISEVLSSCFTIISTS 656
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 1.0
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
Frame = +2
Query: 20 MLDKLGGVYAPRPSTGPHKLRECLPLVI-FLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 196
M++ LG AP P PH LP + +K + + VL+ ++ +
Sbjct: 274 MINDLGKTTAPPP---PHGSTTPLPAAASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPS 330
Query: 197 -TDPTYPAGFMDVVSIEKANELFRVIYDVKGRFTYPPYHAWRSQVQAVRGAARRDRP 364
P+YP V ++ + +VK RF++ P A+ S + ++ RP
Sbjct: 331 PAAPSYPPVDASVKQAADLDQAINFVNNVKNRFSHKP-EAYNSFLDILKSYQHDQRP 386
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 4.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 95 LVIFLRNRLKYALTGNEVLKIV 160
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.0 bits (52), Expect = 4.2
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 270 ITRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITS 94
I RN S+ MD + YV + + S + C + ++LP S YLS R ++ S
Sbjct: 273 ICRNYSY---MDILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLSPNRAELES 328
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 123 LSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 25
L R +R + + S+W +E A+ PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = -2
Query: 297 YVNLPFTSYITRNNSFAFSMDTTSINP------AGYVGSVRTFPSTLMRRCFTI 154
YV++ F ++ F + D T+ G +G TFP+ ++RR F +
Sbjct: 203 YVSICFFTFEFCKQKFFSNADLTAFQKLFLGGFTGIIGQTLTFPADVLRRRFQV 256
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 80 RECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKV 181
+ECLP F +N+L Y L + VL++ K+R + V
Sbjct: 52 KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLV 85
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 7.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 17 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 163
+ L KLG V P+ T H LR+ + L + + ++ +EV+ I+K
Sbjct: 277 YKLKKLGVVAEPQ-LTSIHSLRDDWSFLTLLSDGITDVVSDDEVVDIIK 324
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 327 TWLLQA*YGGYVNLPFT 277
TWL+ A YGG LP T
Sbjct: 505 TWLVTAEYGGTGGLPIT 521
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 98 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 214
++ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 205 GVSPHFPVHFDETLLHNLKHLIAGERVLEPISQED 101
G P P+ F + L +K G +L PI++ED
Sbjct: 120 GEQPTEPIDFADPPLPEVKRYGEGNWLLPPIAKED 154
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.2 bits (50), Expect = 7.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 227 DVVSIEKANELFRVIYDV 280
+V S+EK N++F + Y+V
Sbjct: 1718 NVSSLEKCNQIFSIFYEV 1735
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 197 TDPTYPAGFMDVVSIEKANELFRV-IYDVKGRFTY 298
T+P+Y + + EK NEL V + + +G +TY
Sbjct: 102 TEPSYDLQELRIQGTEKINELANVFLIENRGYWTY 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,333
Number of Sequences: 5004
Number of extensions: 32096
Number of successful extensions: 103
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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