Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M23
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 151 2e-37
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 149 8e-37
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 149 8e-37
01_01_1101 + 8731427-8732938 32 0.19
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 31 0.44
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 30 0.58
07_01_0925 - 7771465-7772195,7772284-7772431,7773706-7774317 27 4.1
04_04_0950 + 29609484-29611025 27 4.1
08_02_0803 + 21390525-21391066,21391799-21391958 27 7.1
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 7.1
04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445... 26 9.4
01_01_0848 + 6614403-6614768 26 9.4
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 151 bits (366), Expect = 2e-37
Identities = 67/92 (72%), Positives = 77/92 (83%)
Frame = +2
Query: 17 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 196
WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDGKVR
Sbjct: 34 WMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVR 93
Query: 197 TDPTYPAGFMDVVSIEKANELFRVIYDVKGRF 292
TD TYPAGFMDVVSI K E FR++YD KGRF
Sbjct: 94 TDKTYPAGFMDVVSIAKTGENFRLLYDTKGRF 125
Score = 35.5 bits (78), Expect = 0.015
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 294 RIRRITPGEAKYKLCEVRRVATGPKSVPYLVTH 392
R+ I +AK+KLC+VR V G K +P+L T+
Sbjct: 126 RLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTN 158
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 149 bits (361), Expect = 8e-37
Identities = 65/94 (69%), Positives = 78/94 (82%)
Frame = +2
Query: 11 KAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGK 190
K WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGK
Sbjct: 16 KHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGK 75
Query: 191 VRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRF 292
VRTD TYPAGFMDV+SI K E +R++YD KGRF
Sbjct: 76 VRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRF 109
Score = 37.5 bits (83), Expect = 0.004
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 294 RIRRITPGEAKYKLCEVRRVATGPKSVPYLVTH 392
R++ + +AK+KLC+VR V G K +PYL T+
Sbjct: 110 RLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTY 142
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 149 bits (361), Expect = 8e-37
Identities = 65/94 (69%), Positives = 78/94 (82%)
Frame = +2
Query: 11 KAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGK 190
K WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGK
Sbjct: 16 KHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGK 75
Query: 191 VRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRF 292
VRTD TYPAGFMDV+SI K E +R++YD KGRF
Sbjct: 76 VRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRF 109
Score = 37.5 bits (83), Expect = 0.004
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 294 RIRRITPGEAKYKLCEVRRVATGPKSVPYLVTH 392
R++ + +AK+KLC+VR V G K +PYL T+
Sbjct: 110 RLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTY 142
>01_01_1101 + 8731427-8732938
Length = 503
Score = 31.9 bits (69), Expect = 0.19
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 151 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HPCFSL 5
+HL+ L P H R A A L+ + R P R HAA LV+ HP SL
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHPSVSL 79
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 30.7 bits (66), Expect = 0.44
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -2
Query: 306 YGGYVNLPFTSYITRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTI 154
+GG N+PFTS NS+ F + T I G V RTFP L R+ +
Sbjct: 842 HGGQENIPFTSRDV-ENSYFFVLSCTKIQ-MGVVN--RTFPPDLCRKAANV 888
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 30.3 bits (65), Expect = 0.58
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 212 PAGFMDVVS-IEKANELFRVIYDVKGRFTYPPYHA 313
P G +DVVS I + LF +YD + Y PYHA
Sbjct: 303 PLGSLDVVSRIRRGTALF--LYDFDAKHLYGPYHA 335
>07_01_0925 - 7771465-7772195,7772284-7772431,7773706-7774317
Length = 496
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 256 VIPCNI*CERKVHVSAVSRLEKPSTSCARCGASRPARRAC 375
++ C + C +H RL P T R A R RRAC
Sbjct: 258 ILACAV-CIEALHRLEWERLHGPGTFLCRAAAPRKLRRAC 296
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 165 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 37
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>08_02_0803 + 21390525-21391066,21391799-21391958
Length = 233
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 141 LPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 34
LP Y+S RR S + RSL + R A +PP
Sbjct: 24 LPSRPYISDMRRSAFSDRLLRSLRSEISSRRAPSPP 59
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 71 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 211
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
>04_04_0416 +
25042937-25043350,25044038-25044238,25044343-25044525,
25044975-25045084,25045317-25045376,25045620-25045911,
25046780-25046967,25047275-25048149,25048846-25049805,
25050025-25050068,25050860-25050925,25051176-25051364
Length = 1193
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 216 AGYVGSVRTFPSTLMRRCFTILST 145
A +V + R++PS L RCF T
Sbjct: 112 ADFVDAARSYPSALASRCFAFCPT 135
>01_01_0848 + 6614403-6614768
Length = 121
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 21 CWTSWAACTRRGPRR 65
CW S AA RR PRR
Sbjct: 4 CWASVAAALRRAPRR 18
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,695,074
Number of Sequences: 37544
Number of extensions: 235858
Number of successful extensions: 782
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -