Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M23
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   138   1e-33
Z49132-8|CAA88987.1|  366|Caenorhabditis elegans Hypothetical pr...    30   0.68 
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   1.2  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z93375-1|CAB07563.1|  328|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    27   4.8  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    27   4.8  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  138 bits (335), Expect = 1e-33
 Identities = 62/92 (67%), Positives = 75/92 (81%)
 Frame = +2

Query: 17  WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 196
           WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR+++VDGKVR
Sbjct: 17  WMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVR 76

Query: 197 TDPTYPAGFMDVVSIEKANELFRVIYDVKGRF 292
           T   +P GFMDVV+IE+ NE FR++YD KGR+
Sbjct: 77  TCHKFPTGFMDVVAIERTNEYFRMLYDTKGRY 108



 Score = 33.1 bits (72), Expect = 0.073
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 297 IRRITPGEAKYKLCEVRRVATGPKSVPYLVT 389
           + RI   EA +KLC+V+ V T  K VP L T
Sbjct: 110 VHRIQAAEADFKLCKVKSVRTVNKGVPVLTT 140


>Z49132-8|CAA88987.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK666.8 protein.
          Length = 366

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 24/84 (28%), Positives = 35/84 (41%)
 Frame = -1

Query: 352 TRRTSHSLYLASPGVIRRIREPSFHIIYYTE*LICFLNGYNVHKSRRVRGVSPHFPVHFD 173
           T +T H L L   G++RR ++P     + T  +     G   + S RV       P    
Sbjct: 202 TSKTRHVLMLLDFGLVRRYKDPDGE--WRTHRVKAGFRGTQRYVSTRVHRRLEQTPTDDM 259

Query: 172 ETLLHNLKHLIAGERVLEPISQED 101
            +LL+ L  L+AGE     I   D
Sbjct: 260 VSLLYTLIELLAGELPWRNIENSD 283


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -1

Query: 190 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 98
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -1

Query: 190 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 98
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 279 TSYITRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMR 169
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>Z93375-1|CAB07563.1|  328|Caenorhabditis elegans Hypothetical
           protein C38C6.3 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 VSIEKANELFRVIYDVKGRFTYPPYH 310
           +SIE++NE+ R+      R  YPP H
Sbjct: 54  ISIEESNEIVRITTTHAPRLLYPPTH 79


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 244 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 149
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 244 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 149
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,272,101
Number of Sequences: 27780
Number of extensions: 183388
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)