Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M23
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   3.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +2

Query: 158 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFTYPPYHAW 316
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+      + P   W
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNT-ASVAFVPISGW 196


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +2

Query: 116 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA-GFMDVVSIEKANELFRVIYDVKGRF 292
           R K+ LTG   L   K RL+  +      P +P+   ++ +S E   +L  ++   +G  
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPSMDNINGLSTESKADL-PLLCPAQG-- 238

Query: 293 TYP-PYHAWRSQVQAVRGAARR 355
            +P P H W    + + G++RR
Sbjct: 239 -FPVPVHRW---YKFIEGSSRR 256


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/40 (20%), Positives = 18/40 (45%)
 Frame = +2

Query: 206 TYPAGFMDVVSIEKANELFRVIYDVKGRFTYPPYHAWRSQ 325
           T P  +  ++S  +A  L   ++ +     +PP   W+ +
Sbjct: 168 TRPVSYPQIMSPRRARLLVATVWILSFVICFPPLVGWKDK 207


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 297 IRRITPGEAKYKLCEVRRVATGPKSV 374
           IRR  PG++     EV+R    P+ V
Sbjct: 135 IRRDLPGKSTITTVEVKRDIINPEDV 160


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 134 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRF 292
           T +++    + R+ ++   VRT    P GF D+V  +K  E   +   +  R+
Sbjct: 733 TMSQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQ-KKCEERGILFMPIPNRY 784


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 54   RGAYTPPSLSN 22
            RG YTPP  +N
Sbjct: 994  RGRYTPPQPAN 1004


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,726
Number of Sequences: 438
Number of extensions: 2339
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)