Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M21
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   0.88 
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   6.2  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    24   8.2  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    24   8.2  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    24   8.2  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    24   8.2  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 311 RPIYRELAQVLQQNN*NRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPA 162
           +P+ R+   +  QN       L+   C   + +K GIE    W+ QSP A
Sbjct: 455 QPVTRDFL-LAAQNASGIYLNLNEQYCLVMKDLKDGIEMKPKWLTQSPAA 503


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 284 PELVPDILAVFALYLKPTFQSINDL 358
           P +    L +  +++KPTFQS+ D+
Sbjct: 505 PSVFIAYLLISPIFVKPTFQSLKDV 529


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 7   KSWTPPGGGALNYGSPGLQAFGTGPAI 87
           K WT  G GAL+  +PG Q+    P+I
Sbjct: 121 KIWTGIGIGALSVLAPGYQSETAPPSI 147


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 133 RSSQGHQYNESQRECISPALCRMPAARG 50
           R   GH +    R C+S  LC+    +G
Sbjct: 200 REKGGHYWGYKVRSCLSSQLCKSSPYKG 227


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 326 GRARTRPIYRELAQVLQQNN*NRCCRLHRSQCPSRRGMKSGIE 198
           GR  +  +   L   L++NN +  C L     PSR G  S I+
Sbjct: 319 GRQGSPKVLENLKNTLRKNNKDFVCVLMSEIFPSRLGQFSDID 361


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 7   KSWTPPGGGALNYGSPGLQAFGTGPAI 87
           K WT  G GAL+  +PG Q+  + P I
Sbjct: 117 KIWTGLGIGALSVIAPGYQSESSPPHI 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,745
Number of Sequences: 5004
Number of extensions: 25169
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)