Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M21
(417 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.12
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 1.1
07_01_0688 - 5211484-5211626,5211730-5211826,5211930-5212105,521... 29 1.5
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 29 1.5
07_03_0106 - 13460882-13462086,13463452-13463629 28 3.5
01_06_0373 - 28841462-28842850 28 3.5
07_01_0247 + 1813979-1814207,1815293-1815351,1815725-1815802,181... 27 4.6
03_05_0403 - 23855059-23855075,23855134-23855162,23855318-238553... 27 4.6
03_01_0481 - 3683912-3684694,3684811-3685107,3685199-3685414,368... 27 4.6
02_05_0700 + 31018480-31019832 27 4.6
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 27 4.6
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 27 8.0
08_02_1243 - 25527523-25527960,25527993-25528604 27 8.0
06_03_0400 - 20420257-20421837 27 8.0
06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352 27 8.0
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 32.7 bits (71), Expect = 0.12
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -2
Query: 170 PPADRAVRLSREPLE-PGPPIQRESTGMHIAGPVPNACSPGDP*FRAPPP 24
PP A R P PGPP + G GP P A PG P R PPP
Sbjct: 352 PPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPAL-PGGPRARGPPP 400
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 170 PPADRAVRLSREPLEPGPPIQRES-TGMHIAGPVPNACSPGDP*FRAPPPGG 18
PP LS + + P +Q ES + + P P A +P P PPP G
Sbjct: 505 PPCGSLSILSTDENQLPPEVQHESPSDRKLPSPSPTAAAPPPPPPPPPPPSG 556
>07_01_0688 -
5211484-5211626,5211730-5211826,5211930-5212105,
5212240-5212631,5212712-5212960,5213046-5213188,
5213283-5213402,5214491-5214835
Length = 554
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 19 PPGGGALNYGSPGLQAFGT--GPAIC 90
PP G +YG+ G +A G GPA+C
Sbjct: 24 PPDGARFSYGTAGFRAEGAAMGPAVC 49
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -2
Query: 173 SPPADRAVRLSREPLEPGPPIQRESTGMHIAGPVPNACSPGDP*FRAPPP 24
S PA A P E G +R ++ P P+ C DP APPP
Sbjct: 14 SSPAPAASPSRHPPGEEGGGAERVEVEEYVDPPSPDCCGGADP-DHAPPP 62
>07_03_0106 - 13460882-13462086,13463452-13463629
Length = 460
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 194 HQLWVVQSPPADRAVRLSREPLEPGPPIQR 105
H+L V+ PA R R + PL P P R
Sbjct: 127 HRLRVIDGDPAPRLARTTAAPLSPDPAFLR 156
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 188 LWVVQSPPADRAVRLSREPLEP 123
LWVV+SPP+D + +P EP
Sbjct: 286 LWVVRSPPSDDPAKKFDKPPEP 307
>07_01_0247 +
1813979-1814207,1815293-1815351,1815725-1815802,
1816369-1816536,1816664-1817578
Length = 482
Score = 27.5 bits (58), Expect = 4.6
Identities = 22/69 (31%), Positives = 27/69 (39%)
Frame = -2
Query: 230 PSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGMHIAGPVPNACSPG 51
P RRG K I W Q P R + S P P P ++G+ + P P SP
Sbjct: 286 PLRRGSKLQIGGSSAWAHQQPSCSRFL-ASHRPFTPLLP--GGTSGVPMIPPPPVPGSPW 342
Query: 50 DP*FRAPPP 24
F PP
Sbjct: 343 SQIFPLRPP 351
>03_05_0403 -
23855059-23855075,23855134-23855162,23855318-23855375,
23855667-23856123
Length = 186
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 116 PIQRESTGMHIAGPVPNACSPG-DP*FR--APPPGGVQLL 6
P++ + G+H++GP C P P FR +PPPG + L
Sbjct: 8 PLKLSAVGLHLSGP---RCIPSLPPAFRTISPPPGLIDYL 44
>03_01_0481 -
3683912-3684694,3684811-3685107,3685199-3685414,
3685503-3685829
Length = 540
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +1
Query: 13 WTPPGGGALNYGSP-GLQAFGTGPAICIPVDS 105
W GGA SP AF GP IC+ DS
Sbjct: 461 WLSGDGGAFRNASPFKFTAFQAGPRICLGKDS 492
>02_05_0700 + 31018480-31019832
Length = 450
Score = 27.5 bits (58), Expect = 4.6
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 191 QLWVVQSPPADRAVRLSREPLEPGPPIQREST-GMHIAG-PVPNACSPGDP*FRAPPPG 21
QL + PP L +PL PG P+ +S G + G P+P PG P PPG
Sbjct: 34 QLLPGEKPPGQP---LPGQPL-PGQPLPGQSLPGQPLPGQPLPGQSLPGQPLVGEKPPG 88
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = -2
Query: 128 EPGPPIQRESTGMHIAGPVP-----NACSPGDP*FRAPPPGGV 15
EP PP +R +H+ P P +A +P P PPP GV
Sbjct: 6 EP-PPKKRRLVEVHVPSPAPSPSSSSAPAPASPRSPVPPPPGV 47
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 26.6 bits (56), Expect = 8.0
Identities = 21/65 (32%), Positives = 25/65 (38%)
Frame = -2
Query: 209 SGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGMHIAGPVPNACSPGDP*FRAP 30
+ IE V + PPA A + L P PP G P P PG P P
Sbjct: 892 ANIEKRAPRVPRPPPAPSATANTASALSPPPP---RPPGAPPPPPPPG--KPGGPPPPPP 946
Query: 29 PPGGV 15
PPG +
Sbjct: 947 PPGSL 951
>08_02_1243 - 25527523-25527960,25527993-25528604
Length = 349
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = -2
Query: 230 PSRRGMKSG-IEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGMHIAGPVPNACSP 54
P+R G + + YH W+ Q ++ P G P S A P + CSP
Sbjct: 57 PTREGWWTAFVLYHGCWMTQQAATSVSLPRWCTPSSRGAPTMCSSPPTQSAAPPGSRCSP 116
>06_03_0400 - 20420257-20421837
Length = 526
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 230 PSRRGMKSGIEYHQLWVVQSPPADRAVRLSRE 135
P R+GM I+Y W + PA+ ++ R+
Sbjct: 414 PHRKGMLYNIQYITFWFGEGAPAEAPIKWIRD 445
>06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352
Length = 563
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -3
Query: 172 LRQLIGLFVCHGSRSSQGHQYNESQRECISPALCRMPAARGIHSLE-RRHPVESSF 8
L+++ L + G S+ H Y E + + LC ++S R P ES F
Sbjct: 145 LKEIAELMMLAGHESNLSHAYGEIRNSTLMQCLCLFGVQIDLNSYNPRASPSESGF 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,793,963
Number of Sequences: 37544
Number of extensions: 230531
Number of successful extensions: 745
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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