Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M20
         (157 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    27   1.8  
Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AL034391-1|CAA22302.2|  333|Caenorhabditis elegans Hypothetical ...    25   9.6  

>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 30  VALYAYSRNSYKRNDVGRIRLA 95
           V++Y YSRN  K+N +G + L+
Sbjct: 170 VSIYVYSRNHMKKNTIGFLLLS 191


>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 73  MSGGLDLLALSEEDVTKMLCGDHPFGS 153
           MSGG    AL+EEDV K+L      GS
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGS 27


>AL034391-1|CAA22302.2|  333|Caenorhabditis elegans Hypothetical
           protein Y40H4A.2 protein.
          Length = 333

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 10  ISARGAQWHYTRIVVTLTNATMSGGLDLLALSEEDVTKMLCGDH 141
           +SARG  + +  I  T+       GLDL+  + +  ++M+ G H
Sbjct: 243 LSARGISFSFDDI--TIEKFCQDNGLDLIVRAHQISSEMIRGGH 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,589,901
Number of Sequences: 27780
Number of extensions: 47586
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)