Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M20
         (157 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.049
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    19   7.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    18   9.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    18   9.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    18   9.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    18   9.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 25.8 bits (54), Expect = 0.049
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 84 SSRHRCVCKSYDYTRIMP 31
          +S H C  K+ DYT+IMP
Sbjct: 20 NSPHTCRTKNGDYTKIMP 37


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 39  YAYSRNSYKRN 71
           Y Y+ N+YK N
Sbjct: 322 YNYNNNNYKYN 332


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 37  YTRIVVTLTNATMSGGLDLLALS 105
           YT++ V   + T+  G+  +ALS
Sbjct: 240 YTKLTVAGESFTVKNGIYGIALS 262


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +3

Query: 39  YAYSRNSYKRNDVGR 83
           Y Y+ N+Y  N+  +
Sbjct: 96  YNYNNNNYNNNNYNK 110


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +3

Query: 39  YAYSRNSYKRNDVGR 83
           Y Y+ N+Y  N+  +
Sbjct: 96  YNYNNNNYNNNNYNK 110


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 76  SGGLDLLALSEEDVTKMLCGDHPFG 150
           SGG       + DV K  C + P G
Sbjct: 244 SGGCHCKPGYQADVEKQECTECPIG 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,625
Number of Sequences: 438
Number of extensions: 578
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)