Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M19
         (182 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    23   5.3  
SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces pombe...    23   5.3  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   5.3  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    23   7.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   7.0  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 80  VFTNAKYKSYQKIHRHYTVFTLM*KICLLNLY 175
           +FT   + + + I RH+ +F  +   C+L  Y
Sbjct: 457 LFTLPFFHTIRNIERHFRLFIRLALFCVLTTY 488


>SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 120

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 39  ITICKRNSLLRQVRCLP 89
           + +CKR  +L Q+R +P
Sbjct: 81  LVLCKRRLMLEQIRLVP 97


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 93  QNIRVIKRYIGIILYLP*CKKYV 161
           +NI+++    GIIL L   KKY+
Sbjct: 219 KNIKIVGAIFGIILLLFRLKKYI 241


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 71  TS*VFTNAKYKSYQKIHRHYTV 136
           TS VF   + K++ + HR YTV
Sbjct: 122 TSPVFAFYRLKNFYQNHRRYTV 143


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 133  SIMPMYLLITLIFCIGKHLTCLNKEFRLQIVIFVIKSSCR 14
            S++   L    + C G    CL+ +F L+ +  VIK++ R
Sbjct: 2033 SLLSQVLDSFFLCCSGSLSNCLHYDFGLRAMKVVIKAAKR 2072


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,165
Number of Sequences: 5004
Number of extensions: 12299
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)